Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05719 ATGAACCTCGAGGAGAAAGTCACCATGGACTTGGTTCCACCTTCTGATCAACACCTCTGCTACGTTCGTTGCAACTTCTGTAACACTGTCCTCGCTGTTGGAATACCATGCAAGAGGCTGCTAGACACTGTGACAGTAAAGTGTGGACACTGCAGCAACCTCTCTTTTCTCACCACAAGACCACCAAATTCCAAAACTCAAACTGTTGATCACACCCTCACTCTCCAGGGAATTTACAGTAGCAAAAAGGGACAACCATCATCCTCCTCTTCTTCTTCACCAACTACTTCACCTGAATCATTGTCCCCTAAACCACCTCCATTTGTTGTCAAACCACCAGAGAAAAAGCACCGTCTCCCTTCTGCTTACAACCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCGAACCCTCAGATCCCACATAGAGAAGCTTTCAGTGCTGCTGCAAAAAATTGGGCTAGGTTCATCCCTAATTCACCAACCAGTTCACTTTCTGCAACTAAACGTAACACTGAATGA 525 0.459 MNLEEKVTMDLVPPSDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPNSKTQTVDHTLTLQGIYSSKKGQPSSSSSSSPTTSPESLSPKPPPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPQIPHREAFSAAAKNWARFIPNSPTSSLSATKRNTE 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05719 174 MobiDBLite consensus disorder prediction 77 98 - -
Vifa1g05719 174 PANTHER PROTEIN YABBY 6-RELATED 16 164 IPR006780 GO:0007275
Vifa1g05719 174 SUPERFAMILY HMG-box 100 155 IPR036910 -
Vifa1g05719 174 FunFam protein CRABS CLAW isoform X3 109 169 - -
Vifa1g05719 174 CDD HMG-box_SF 118 154 - -
Vifa1g05719 174 MobiDBLite consensus disorder prediction 77 116 - -
Vifa1g05719 174 Gene3D High mobility group box domain 106 169 IPR036910 -
Vifa1g05719 174 Pfam YABBY protein 16 157 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05719 Vifa-Chr1 888956396 888957503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05719 1 168 C2C2-YABBY Transcription Factor Family AT1G69180 66.860 3.17e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vifa1g05719 YABBY 1e-54 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05719 K25796 - gmx:100819079 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05719 1 888956396 888957503 Vifa1g05719 1 888956396 888957503 ECH