Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05718 ATGATGGAGGTTTTGACAACAACAACCGCCACAAACACAAACACTACTCCTTTAACAACAATTTCAAAACCATCAGAACCCGAATCAGAAAACCCGACCCGGATCCATCAACAACAACCCATTAACACAACAACCACCTCAAACATAACAAAGCCTTTGTCTTTTTCAAATGGGGTTCTCAAACGCCACCACCCTAACACTCACAACAACAACAACGTTGTTGCTGTTACTTACAAAGAATGTCTCAAAAACCACGTGGCAACCTTAGGTGGTCACGCACTTGACGGTTGTTGTGAATTCATGCCGTCACCAACCGCCACCTCCGAAGACCCCGCTTCCATAAAATGCGCTGCTTGTGGATGTCACCGGAATTTTCACCGCCGGGAACCAGAAGAACCGATTTCCACCGTTTTGGAATATCAACCTCACCACCGCCACCACCCACCACCTCCGCCGCTGTTTCAGTCCCGTTCACCAAGCTCCCCGTCTCCACCGCCGATCTCATCATACCCTTCAGCTCCACACATGCTCTTAGCACTCTCCGGTGCCGGAGTTGGACTCTCAATCCCGCCGGAAAACACAGCAGCGCCGTTAAACCTTGGTTCTCCGATGGGAGCAAGTAGAAAAAGATTCAGAACGAAATTCACTCAAGAGCAGAAGGAGAAGATGCATGAATTAGCTGAGAGAGTTGGGTGGAAGATGCAGAAGAGAGATGAAGAAATGGTTAACGGATTTTGCAATGAAGTTGGTGTTGATAGAAGTGTTCTCAAAGTTTGGATGCATAACAATAAGAACACTTTAGGAAGAAAATTATCAGATCATGTTGATGGTGACGGCGCCTCCGTGAGATCCGCCGGGGACGGTGTCTCCGGTGGTGGTTTTGGTGTTCATGAGAATGATAATAATGGGATTAACGTTGCTGCTTGTGCTACTAATGGATCTTCTTCTTCTTGA 954 0.4727 MMEVLTTTTATNTNTTPLTTISKPSEPESENPTRIHQQQPINTTTTSNITKPLSFSNGVLKRHHPNTHNNNNVVAVTYKECLKNHVATLGGHALDGCCEFMPSPTATSEDPASIKCAACGCHRNFHRREPEEPISTVLEYQPHHRHHPPPPPLFQSRSPSSPSPPPISSYPSAPHMLLALSGAGVGLSIPPENTAAPLNLGSPMGASRKRFRTKFTQEQKEKMHELAERVGWKMQKRDEEMVNGFCNEVGVDRSVLKVWMHNNKNTLGRKLSDHVDGDGASVRSAGDGVSGGGFGVHENDNNGINVAACATNGSSSS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05718 317 MobiDBLite consensus disorder prediction 1 37 - -
Vifa1g05718 317 FunFam Zinc-finger homeodomain protein 2 199 269 - -
Vifa1g05718 317 NCBIfam homeobox domain, ZF-HD class 208 265 IPR006455 -
Vifa1g05718 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 267 - -
Vifa1g05718 317 MobiDBLite consensus disorder prediction 147 170 - -
Vifa1g05718 317 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 77 129 IPR006456 -
Vifa1g05718 317 MobiDBLite consensus disorder prediction 141 170 - -
Vifa1g05718 317 SUPERFAMILY Homeodomain-like 199 269 IPR009057 -
Vifa1g05718 317 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 129 IPR006456 -
Vifa1g05718 317 Pfam ZF-HD protein dimerisation region 76 130 IPR006456 -
Vifa1g05718 317 Gene3D - 199 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05718 Vifa-Chr1 888628047 888629000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05718 2 264 ZF-HD Transcription Factor Family AT5G15210 51.103 6.30e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa1g05718 ZF-HD_dimer 4.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05718 - - lja:Lj5g3v2258260.1 319.701