Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05703 ATGCTTAACTCTTCCTCTTCCTCTTCCTCTTCATTCATATTCCTTTCTGTCATTATCCTCCTCCAAACCACTTTCTCTTTCTCTTCTACTCCTAATCCTAACCATGAAGTCACAACTCTCTTCACATGGCTTCACACTTCATCTCCACAACCACCTTCATCATTCTCCAACTGGAACATCCTTGACATAAATCCATGCAACTGGACCTCCATAACATGTTCTTCACTATTCTTTGTAACTGAAATCAATATCCAATCCATCACTCTTCAGCTTCCTATACCTTCAAACCTCTCTAAATTGCAGTTTCTGAATAAACTTGTCATTTCTGATTCCAATCTCACTGGAACTATTCCTTTTGACATTGGTGAATGTTCTTCACTTACTGTTATTGATCTTAGCTTTAACAATCTCGTTGGTTCGATTCCTTCGAGTATCGGAAAGCTGCATAATCTAGTTAACTTGTCTTTGAATTCTAATCAGCTTACTGGTAAAATTCCAGATGAGATAACTAACTGCATTAGTTTAAAGAACCTTCACCTTTTCGATAATCAGTTTGGTGGAAGTATCCCGAATTCGATTGGAAAATTGTCGAAACTTGAATTTCTTAGAGTAGGTGGAAACAAAGATATAACTGGGAAGATTCCAGAAGAGATTGGAGAATGTAGTAATTTGACAGTTTTAGGCCTTGCTGATACAAGAATTTCAGGCTCTTTACCTGTTTCTTTTGGTAAGCTTAAGAGACTTCAAACTTTGTCAATTTATACAACTATGGTTTCTGGTGAAATTCCTAAAGAGATAGGTGATTGTTCTGAGCTTGTTGATTTGTTTCTATATGAAAATAGTTTATCAGGTTCTATTCCATCAGAGATTGGTAAGCTCAAGAAGCTTGAACAGTTGTTTCTGTGGCAGAATGGACTTGTTGGTGCTATTCCAAATGAGATTGGTAATTGTTCAAGTTTGAGAAACATTGATCTATCTTTGAATTCTTTATCTGGAACTATACCTTTGTCTTTAGGGGATCTTTTAGAGCTTCAAGAGTTTATGATAAGTGATAATAATATATCTGGTTCCATTCCTGCAACACTTTCAAATGCTAACAAGCTTCAACAGTTGCAAGTTGATACTAATCAGCTATCGGGTTTGATTCCGCCGGAGATTGGGAAGTTGTCGAATCTTTTAGTGTTTTTTGCTTGGCAGAATCAGCTTGAAGGAAGCATTCCTTCAAGTTTGGGAAACTGTAGTAACTTACAAGCGCTTGATTTGTCGAGAAATTCGCTTACTGGTAGTATTCCTTCTGGACTATTTCAGCTTCAAAACCTGACAAAACTGCTTCTCATTTCCAATGACATATCAGGTTCTATACCATCGGAAATCGGTAGTTGTAAATCTCTTATAAGGTTGAGGCTTGGAAGCAATAGGATTGTTGGAAGCATTCCTAAGACAATTGGTAGTCTCAAGAGTTTGAACTTTTTAGATTTTTCTGGGAACCGTCTTTCGGGTCAGGTTCCTGATGAAATAAGAAGCTGCACAGAATTGCAGATGATAGACTTCAGTGCTAACAACTTAGAAGGCTCGCTTCCGAATTCGTTGTCATCACTATCTTCACTTCAGGTATTGGATGCTTCTTTTAACAAGTTTTCAGGTCCGTTGCCTGCGAGTTTAGGCCGCCTTGTTTCGTTAAGTAAATTAATCCTAGGAAATAACTTGTTTTCTGGACCTATTCCTGCATCATTAAGCCTATGTTCAAGTCTCCAACTTCTTGATCTCAGTAGCAATCAGCTCACTGGAAGCATACCGGCCGAATTAGGCCAAATCGAAGCGCTGGAAATCGCTCTTAATCTAAGTTGCAATCTACTGAGTGGAACAATACCGACTCGAATATCTTCTCTTAACAAGCTTTCCATATTAGACCTGTCATATAACCAGTTGGAAGGAGATTTGCAAACTCTCTCAGAGCTTGATAACCTTGTCTGCCTCAATGTTTCTTACAATAGATTCACCGGCTATCTTCCAGATAACAAGCTTTTCAGACAGTTAACTTCGAAAGACATCTATGGAAATCAAGGACTTTGCACTTCAGGTCAGGACTCATGCTTTGTAAAGGATTCTAGCAAAACCGATATGGCGTTGAATGAGAATGAGGTAAGGAAATCGCGAAGGATTAAGCTAACCATTGGGTTGCTGATAGCGTTGACAGTATTAATGATACTTATGGGGATAACTGCTGTGATCAAAGCAAGGAGAACCATTCGAGACGATGATTCGGAGTTAGGAGACTCGTGGCCATGGCAGTTTATACCATTCCAGAAGCTAAAGTTTTCAGTGGAGCAAGTACTGAGATGTTTGATTGATAGGAATATAATTGGTAAGGGATGTTCTGGTGTTGTTTATCGAGGTGAAATGGATAACGGCCAAGTCATTGCTGTGAAGAAACTTTGGCCTATAACAACCGATGAGGGAGAGGCATTGAAGGATTTCAAAAGTGGAGTTCGAGATTCGTTCTCAGTTGAGGTTAAGACGCTTGGCTCGATCCGTCATAAGAACATTGTGAGGTTCTTAGGTTGTTGTTGGAACAAGAAAACAAGATTGCTTATTTTTGATTACATGCCAAATGGAAGTTTAAGCAGTGTACTTCATGAGAGGACTGGAAATTCTCTTGAATGGAAACTTAGGTTCCGAATTCTGTTAGGTTCTGCAGAAGGACTTGCATATCTACACCATGACTGTGTTCCCCCTATAGTTCACAGAGATATTAAAGCCAATAACATCTTAATTGGACTTGAATTTGAACCTTATATAGCCGACTTTGGCTTGGCCAAGCTTGTCGATGATGGTGATATCGGTCGTTCTTCCAATACAGTCGCCGGTTCCTATGGATACATTGCTCCAGAATACGGCTACATGATGAAGATCACAGAAAAGAGCGATGTTTATAGCTATGGGGTAGTTTTGCTAGAAGTCTTGACTGGCAAGCAACCGATCGATCCAACAATACCAGACGGATTACACATTGTTGATTGGGTGAGACGAAAAAGAGGACTTGAAGTACTTGATCCTAGCTTACTTTCAAGACCAGAATCAGAAATAGAAGAAATGATACAGGCATTGGGAATAGCCTTATTGTGTGTAAATCCATCACCTGATGAAAGACCAACAATGAGAGATATAGCTGCAATGTTGAAGGAAATAAAGCATGAAAGAGAGGAATATGCGAAATTCGACGCCCTTTTAAAAGGGTCTCCTGCTAATGATTCCAAAGTTGTTGCAACATCTTCATCAGCATCAATCATGCAAAATTTGAATATGAAAAGCAATAATACAAGCTTCTCAGTGACTTCACTGCTTCACTCATCTTCAAGTTCTAAGCTGGGTTTCAAATGA 3381 0.3904 MLNSSSSSSSSFIFLSVIILLQTTFSFSSTPNPNHEVTTLFTWLHTSSPQPPSSFSNWNILDINPCNWTSITCSSLFFVTEINIQSITLQLPIPSNLSKLQFLNKLVISDSNLTGTIPFDIGECSSLTVIDLSFNNLVGSIPSSIGKLHNLVNLSLNSNQLTGKIPDEITNCISLKNLHLFDNQFGGSIPNSIGKLSKLEFLRVGGNKDITGKIPEEIGECSNLTVLGLADTRISGSLPVSFGKLKRLQTLSIYTTMVSGEIPKEIGDCSELVDLFLYENSLSGSIPSEIGKLKKLEQLFLWQNGLVGAIPNEIGNCSSLRNIDLSLNSLSGTIPLSLGDLLELQEFMISDNNISGSIPATLSNANKLQQLQVDTNQLSGLIPPEIGKLSNLLVFFAWQNQLEGSIPSSLGNCSNLQALDLSRNSLTGSIPSGLFQLQNLTKLLLISNDISGSIPSEIGSCKSLIRLRLGSNRIVGSIPKTIGSLKSLNFLDFSGNRLSGQVPDEIRSCTELQMIDFSANNLEGSLPNSLSSLSSLQVLDASFNKFSGPLPASLGRLVSLSKLILGNNLFSGPIPASLSLCSSLQLLDLSSNQLTGSIPAELGQIEALEIALNLSCNLLSGTIPTRISSLNKLSILDLSYNQLEGDLQTLSELDNLVCLNVSYNRFTGYLPDNKLFRQLTSKDIYGNQGLCTSGQDSCFVKDSSKTDMALNENEVRKSRRIKLTIGLLIALTVLMILMGITAVIKARRTIRDDDSELGDSWPWQFIPFQKLKFSVEQVLRCLIDRNIIGKGCSGVVYRGEMDNGQVIAVKKLWPITTDEGEALKDFKSGVRDSFSVEVKTLGSIRHKNIVRFLGCCWNKKTRLLIFDYMPNGSLSSVLHERTGNSLEWKLRFRILLGSAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDIGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHIVDWVRRKRGLEVLDPSLLSRPESEIEEMIQALGIALLCVNPSPDERPTMRDIAAMLKEIKHEREEYAKFDALLKGSPANDSKVVATSSSASIMQNLNMKSNNTSFSVTSLLHSSSSSKLGFK 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05703 1126 ProSitePatterns Serine/Threonine protein kinases active-site signature. 913 925 IPR008271 GO:0004672|GO:0006468
Vifa1g05703 1126 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 765 868 - -
Vifa1g05703 1126 ProSitePatterns Protein kinases ATP-binding region signature. 788 811 IPR017441 GO:0005524
Vifa1g05703 1126 FunFam Nuclear pore complex protein NUP107 33 186 - -
Vifa1g05703 1126 Gene3D Ribonuclease Inhibitor 607 698 IPR032675 -
Vifa1g05703 1126 Gene3D Ribonuclease Inhibitor 525 606 IPR032675 -
Vifa1g05703 1126 Gene3D Ribonuclease Inhibitor 337 428 IPR032675 -
Vifa1g05703 1126 Gene3D Transferase(Phosphotransferase) domain 1 869 1079 - -
Vifa1g05703 1126 Gene3D Phosphorylase Kinase; domain 1 767 868 - -
Vifa1g05703 1126 ProSiteProfiles Leucine-rich repeat profile. 415 437 IPR001611 GO:0005515
Vifa1g05703 1126 ProSiteProfiles Leucine-rich repeat profile. 632 654 IPR001611 GO:0005515
Vifa1g05703 1126 SMART LRR_typ_2 533 557 IPR003591 -
Vifa1g05703 1126 SMART LRR_typ_2 413 437 IPR003591 -
Vifa1g05703 1126 SMART LRR_typ_2 485 509 IPR003591 -
Vifa1g05703 1126 SMART LRR_typ_2 341 365 IPR003591 -
Vifa1g05703 1126 SMART LRR_typ_2 293 317 IPR003591 -
Vifa1g05703 1126 SMART LRR_typ_2 630 653 IPR003591 -
Vifa1g05703 1126 SMART LRR_typ_2 148 172 IPR003591 -
Vifa1g05703 1126 SMART LRR_typ_2 581 605 IPR003591 -
Vifa1g05703 1126 FunFam Putative LRR receptor-like serine/threonine-protein kinase 611 696 - -
Vifa1g05703 1126 SUPERFAMILY L domain-like 44 399 - -
Vifa1g05703 1126 SMART LRR_sd22_2 148 171 - -
Vifa1g05703 1126 SMART LRR_sd22_2 630 655 - -
Vifa1g05703 1126 SMART LRR_sd22_2 509 535 - -
Vifa1g05703 1126 SMART LRR_sd22_2 293 325 - -
Vifa1g05703 1126 FunFam LRR receptor-like serine/threonine-protein kinase 531 606 - -
Vifa1g05703 1126 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Vifa1g05703 1126 ProSiteProfiles Protein kinase domain profile. 782 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05703 1126 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 869 1078 - -
Vifa1g05703 1126 SUPERFAMILY L domain-like 376 696 - -
Vifa1g05703 1126 PRINTS Leucine-rich repeat signature 584 597 - -
Vifa1g05703 1126 PRINTS Leucine-rich repeat signature 630 643 - -
Vifa1g05703 1126 Gene3D Ribonuclease Inhibitor 76 336 IPR032675 -
Vifa1g05703 1126 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 208 431 - -
Vifa1g05703 1126 Gene3D Ribonuclease Inhibitor 429 524 IPR032675 -
Vifa1g05703 1126 SMART serkin_6 782 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05703 1126 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 289 1062 - -
Vifa1g05703 1126 Pfam Protein tyrosine and serine/threonine kinase 786 1059 IPR001245 GO:0004672|GO:0006468
Vifa1g05703 1126 SUPERFAMILY Protein kinase-like (PK-like) 760 1061 IPR011009 -
Vifa1g05703 1126 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 432 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05703 Vifa-Chr1 884289179 884292642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05703 54 1095 Receptor kinase-like Gene Family AT5G56040 48.402 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g05703 PK_Tyr_Ser-Thr 3.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05703 - - gmx:100818541 1726.84