Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05700 ATGGCTCCCTTCAAGCTTCATCTTTCTTCATTTAATCACTCTTCCTCCACTACTACTGACGATGCTGATCATCTTACCCTCAAATGGAAACGCCCACAACAAGATTTGTCTTCATATCCCAATGAAACTAATGTTTGTCTCCACCTATCTCTAGGCTTTTGTAACTGCATACAAATTGCTGAACGAGAAAGTAATGTTGGAACAAGTTCTGATTCATCAACCAGCCGTGATGATCCATGGAAGATCAAGAAGGTGCTCACAGCAAGTGATCTTGGCAATAATAGCAGGCTTTTGTTGAACAAAGAATTGGCTAAAAAGTGGGTGGTTCCTTTTGTGGACAAAGCTGAAGCTGAAAAGGATGGAGTGAAAGTTCCGGTGTTTGATGTTGACACTCAAACTCTCCGTTCTCTTTTGTTCAAGATATGGTCTTCGAACGGAAGTCATGTTTTCAATGATACATGGATCAAGGATTTTGTAAAAATAAGAAACTTAAAGGCTGGAGATGAAATCGGTCTTAAATGGGATCAAAACGAGAACAAATTTGATTTTTCTGTTCTTCGTAGGGCTTGA 570 0.3947 MAPFKLHLSSFNHSSSTTTDDADHLTLKWKRPQQDLSSYPNETNVCLHLSLGFCNCIQIAERESNVGTSSDSSTSRDDPWKIKKVLTASDLGNNSRLLLNKELAKKWVVPFVDKAEAEKDGVKVPVFDVDTQTLRSLLFKIWSSNGSHVFNDTWIKDFVKIRNLKAGDEIGLKWDQNENKFDFSVLRRA 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05700 189 Gene3D - 75 188 IPR015300 -
Vifa1g05700 189 CDD B3_DNA 80 187 IPR003340 GO:0003677
Vifa1g05700 189 MobiDBLite consensus disorder prediction 8 22 - -
Vifa1g05700 189 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g05700 189 SUPERFAMILY DNA-binding pseudobarrel domain 77 187 IPR015300 -
Vifa1g05700 189 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 53 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05700 Vifa-Chr1 883577238 883577807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05700 70 168 B3 DNA Binding Superfamily AT1G20600 31.000 5.57e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05700 - - psat:127081321 178.718