Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05695 ATGGGATCTCATGGTGGAGCAATCCAAGCGCCAAAGGCAGGACCTTTGGCTAGAGAAGGATCTTTGTACAATCTCACACTTGATGAGGTGCAAAATCAGCTTGGAAATTTAGGGAAACCCTTAGGAAGCATGAATCTGGATGAGTTACTCAAGAGTTTGTGGACATCTGAAGCTGCTCAAGCTTCTGGATTGGATTCTGGTGCTACTGATGCTTACATGCAACATGGTCAACTAGCTTCTGGGACGTCGATGAATCCGCTGACACTTTCCAGTGATCTTAGCAAGAAAACTATTGATGAGGTTTGGAGAGATATGCAACAGAAGAAGAGTAGTAGTCAAGATAGGAGAACAGCTACACTAGGTGAGATGACTTTGGAAGATTTCTTGATGAAAGCTGGTGTGGCGACTGATTCTTTTCCTACAGAGGATAATGCTATGTCAGGAAGGGTTGATTCTCAACAACAACAACAACAACACAATACATCTCAACATGGTCATTGGATGCATTTCCAAATCCCTCCAGTGCAGCAACCACAACCACAACAACAGCATCAGCATCAGCATCAAAATCATCAGAATAAGATGATGCCTGGTTTTGCAAGCTATATGGCTAGTCATGTGGTTCAACCGGTTTTGGATGCAGGTTACAATGAAGCAATGGTGAGTATATCACCGTCTGCTTTAATGGCTACTTCATCGGATACACAAACTCAAGGTAGGAAAAGGGTTGCCTCTGGTGTTGTGGTTGAGAAGACTGTGGAAAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCTGCAGCTCGGTCGCGGGCTAGAAAACAGGCTTACACACAAGAACTGGAGATCAAAGTTTCACATTTAGAAGAAGAAAATGAAAGGCTTAAAAGACTGCATGAGATGGAGAGAGTATTACCAAGTATGCCACCACCAGATCCTAAGCATCAGCTTCGCAGAACTAGCTCAGCTCCCTTTTGA 978 0.4366 MGSHGGAIQAPKAGPLAREGSLYNLTLDEVQNQLGNLGKPLGSMNLDELLKSLWTSEAAQASGLDSGATDAYMQHGQLASGTSMNPLTLSSDLSKKTIDEVWRDMQQKKSSSQDRRTATLGEMTLEDFLMKAGVATDSFPTEDNAMSGRVDSQQQQQQHNTSQHGHWMHFQIPPVQQPQPQQQHQHQHQNHQNKMMPGFASYMASHVVQPVLDAGYNEAMVSISPSALMATSSDTQTQGRKRVASGVVVEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKVSHLEEENERLKRLHEMERVLPSMPPPDPKHQLRRTSSAPF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05695 325 Coils Coil 278 298 - -
Vifa1g05695 325 SUPERFAMILY Leucine zipper domain 255 300 IPR046347 GO:0003700|GO:0006355
Vifa1g05695 325 SMART brlzneu 251 319 IPR004827 GO:0003700|GO:0006355
Vifa1g05695 325 MobiDBLite consensus disorder prediction 138 164 - -
Vifa1g05695 325 Gene3D - 253 305 - -
Vifa1g05695 325 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 253 305 - -
Vifa1g05695 325 Pfam bZIP transcription factor 255 297 IPR004827 GO:0003700|GO:0006355
Vifa1g05695 325 CDD bZIP_plant_BZIP46 255 301 - -
Vifa1g05695 325 MobiDBLite consensus disorder prediction 301 325 - -
Vifa1g05695 325 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 258 273 IPR004827 GO:0003700|GO:0006355
Vifa1g05695 325 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 253 297 IPR004827 GO:0003700|GO:0006355
Vifa1g05695 325 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 16 324 IPR043452 GO:0003700|GO:0045893
Vifa1g05695 325 MobiDBLite consensus disorder prediction 140 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05695 Vifa-Chr1 882595518 882597452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05695 1 325 bZIP Transcription Factor Family AT3G56850 54.217 6.30e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g05695 bZIP_1 2.3e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05695 K14432 - gmx:100783666 394.43