Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05694 ATGTTTCATGCAAAGAAGTTTCCGGAGGCAGCTATGATGCCTTATAAATCTCAAGGGGGAGGTGAAGAACTTGTAGATGTTGGGGGTTTGAGTGGATCTGCTGTGAAGAATGCTGCACCGGCTGGGGGAGGTGGGAAGCAACGGTTGCGTTGGACGTCGGATCTTCATGACCGATTTGTGGATGCGATTACGCAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTTAGAGTGATGGGGGTGCCTGGTCTGACCATTTATCATGTTAAAAGTCATTTACAGAAGTATCGCTTGGCGAAGTACTTGCCCGAATCACCAGCTGATGGTAAAGATTCTAAGGATGAGAAAAGGAATTCTGGAGACAGCATTTCTGGCGCCGATTCTTCCCCGGGATTGCAAATCAATGACGCACTACGGATGCAGATGGAGGTTCAAAAACGTTTGCATGAACAGCTTGAGGTTCAAAAGCAATTACAGATGAGAATTGAAGCTCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAATTAGGCAGTACCTTGGCAGCGTCGGAAACACCTCCATTGCCCCATGATAAGCAAAATCATTCCGTATCAGAGCCTTCTGGGTCTAGTGATGCCCTTGCAGGGACTTTTCCTCCACATAAAAAACAGAGAATTGATGAAGGTTTAAAGGATAATTTCACTGCATCCCAAGTTACAAGAAAGACTACACAGAAGAATGATTGTAATGTTGGCTGCTTGGATCCGAACTTGTATGAAGATGATGCTGGTTTCGGATTTGATTTGGAGACAGAAAATGACGACGACAATGAGAGTGAGCAGTAA 840 0.45 MFHAKKFPEAAMMPYKSQGGGEELVDVGGLSGSAVKNAAPAGGGGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSISGADSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETPPLPHDKQNHSVSEPSGSSDALAGTFPPHKKQRIDEGLKDNFTASQVTRKTTQKNDCNVGCLDPNLYEDDAGFGFDLETENDDDNESEQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05694 279 Coils Coil 137 157 - -
Vifa1g05694 279 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 45 218 IPR044848 GO:0003700
Vifa1g05694 279 MobiDBLite consensus disorder prediction 194 210 - -
Vifa1g05694 279 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Vifa1g05694 279 SUPERFAMILY Homeodomain-like 46 100 IPR009057 -
Vifa1g05694 279 MobiDBLite consensus disorder prediction 106 123 - -
Vifa1g05694 279 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
Vifa1g05694 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 103 IPR017930 -
Vifa1g05694 279 MobiDBLite consensus disorder prediction 183 250 - -
Vifa1g05694 279 MobiDBLite consensus disorder prediction 260 279 - -
Vifa1g05694 279 MobiDBLite consensus disorder prediction 105 135 - -
Vifa1g05694 279 FunFam Myb family transcription factor 45 103 - -
Vifa1g05694 279 MobiDBLite consensus disorder prediction 263 279 - -
Vifa1g05694 279 Gene3D - 45 104 - -
Vifa1g05694 279 MobiDBLite consensus disorder prediction 229 249 - -
Vifa1g05694 279 Pfam MYB-CC type transfactor, LHEQLE motif 134 180 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05694 Vifa-Chr1 882587320 882592797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05694 28 188 G2-like Transcription Factor Family AT3G13040 50.909 1.21e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g05694 Myb_DNA-binding 2.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05694 - - tpra:123889278 485.337