Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05693 ATGTTTCATGCAAAGAAGTTTCCGGAGGCAGCTATGATGCCTTATAAATCTCAAGGGGGAGGTGAAGAACTTGTAGATGTTGGGGGTTTGAGTGGATCTGCTGTGAAGAATGCTGCACCGGCTGGGGGAGGTGGGAAGCAACGGTTGCGTTGGACGTCGGATCTTCATGACCGATTTGTGGATGCGATTACGCAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTTAGAGTGATGGGGGTGCCTGGTCTGACCATTTATCATGTTAAAAGTCATTTACAGAAGTATCGCTTGGCGAAGTACTTGCCCGAATCACCAGCTGATGATTCTAAGGATGAGAAAAGGAATTCTGGAGACAGCATTTCTGGCGCCGATTCTTCCCCGGGATTGCAAATCAATGACGCACTACGGATGCAGATGGAGGTTCAAAAACGTTTGCATGAACAGCTTGAGGTTCAAAAGCAATTACAGATGAGAATTGAAGCTCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAATTAGGCAGTACCTTGGCAGCGTCGGAAACACCTCCATTGCCCCATGATAAGCAAAATCATTCCGTATCAGAGCCTTCTGGGTCTAGTGATGCCCTTGCAGGGACTTTTCCTCCACATAAAAAACAGAGAATTGATGAAGGTTTAAAGGATAATTTCACTGCATCCCAAGTTACAAGAAAGACTACACAGAAGAATGATTGTAATGTTGGCTGCTTGGATCCGAACTTGTATGAAGATGATGCTGGTTTCGGATTTGATTTGGAGACAGAAAATGACGACGACAATGAGAGTGAGCAGTAA 834 0.4508 MFHAKKFPEAAMMPYKSQGGGEELVDVGGLSGSAVKNAAPAGGGGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADDSKDEKRNSGDSISGADSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETPPLPHDKQNHSVSEPSGSSDALAGTFPPHKKQRIDEGLKDNFTASQVTRKTTQKNDCNVGCLDPNLYEDDAGFGFDLETENDDDNESEQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05693 277 FunFam Myb family transcription factor 45 103 - -
Vifa1g05693 277 Gene3D - 45 104 - -
Vifa1g05693 277 MobiDBLite consensus disorder prediction 258 277 - -
Vifa1g05693 277 MobiDBLite consensus disorder prediction 106 133 - -
Vifa1g05693 277 MobiDBLite consensus disorder prediction 261 277 - -
Vifa1g05693 277 SUPERFAMILY Homeodomain-like 46 100 IPR009057 -
Vifa1g05693 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 103 IPR017930 -
Vifa1g05693 277 MobiDBLite consensus disorder prediction 181 227 - -
Vifa1g05693 277 Coils Coil 135 155 - -
Vifa1g05693 277 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Vifa1g05693 277 MobiDBLite consensus disorder prediction 192 208 - -
Vifa1g05693 277 Pfam MYB-CC type transfactor, LHEQLE motif 132 178 IPR025756 -
Vifa1g05693 277 MobiDBLite consensus disorder prediction 106 121 - -
Vifa1g05693 277 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 45 216 IPR044848 GO:0003700
Vifa1g05693 277 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05693 Vifa-Chr1 882587320 882592797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05693 46 178 G2-like Transcription Factor Family AT4G13640 55.782 6.44e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g05693 Myb_DNA-binding 2.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05693 - - tpra:123889278 476.092