Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05686 ATGTCTCATCAAGGATTTCTAGCTCTTGGAATTATTCTCTGCATGATCTCTAATGTTTATGGTTATCGCTATGGCAACAATTGGGGTTGGACTAATGCACATGCAACCTTCTATGGTGGCAGTGATGCTTCTGGCACAATGGGTGGGGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCACTGCATTATTCAACAATGGTTTGAGTTGTGGTGCATGCTATCAAATTAAATGTGCTAATGACCCAAAATGGTGTCTCCATGGCTCCATTGTTGTTACTGCCACGAATTTTTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTCTCTCAACCTGTTTTTCAACACATTGCTCAGTATAGAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGTTGTAGAAGAAGAGGAGGAATAAGGTTCACAATTAATGGTCATTCTTATTTCAACTTAGTTCTTGTGACTAATGTTGGTGGTGCTGGTGATGTGCATTCTTTATCAATCAAAGGTTCAAGGACAAGATGGCAAGCCATGTCAAGAAATTGGGGACAAAATTGGCAGAGCAACTCTTACTTGAATGGACAAAGTCTTTCATTTTTAGTCACTACTGGTAATGGTCATAGCATTGTGTCATTTAATGTTGCCCCACCTAGTTGGTCCTTTGGACAAACCTACACTGGAAGACAGTTCCTCTACTAA 741 0.4089 MSHQGFLALGIILCMISNVYGYRYGNNWGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYQIKCANDPKWCLHGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVVYRRVSCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSLSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05686 246 SMART dpbb_1 65 142 IPR007112 -
Vifa1g05686 246 FunFam Expansin 152 244 - -
Vifa1g05686 246 Pfam Lytic transglycolase 65 142 IPR009009 -
Vifa1g05686 246 Gene3D - 152 244 IPR036749 -
Vifa1g05686 246 CDD DPBB_EXPA_N 29 147 - -
Vifa1g05686 246 Gene3D - 16 148 IPR036908 -
Vifa1g05686 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Vifa1g05686 246 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Vifa1g05686 246 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Vifa1g05686 246 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Vifa1g05686 246 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Vifa1g05686 246 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Vifa1g05686 246 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Vifa1g05686 246 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
Vifa1g05686 246 FunFam Expansin 18 148 - -
Vifa1g05686 246 SUPERFAMILY Barwin-like endoglucanases 29 170 IPR036908 -
Vifa1g05686 246 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Vifa1g05686 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 152 IPR007112 -
Vifa1g05686 246 PANTHER EXPANSIN-A15 21 244 IPR002963 GO:0009664
Vifa1g05686 246 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Vifa1g05686 246 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Vifa1g05686 246 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Vifa1g05686 246 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Vifa1g05686 246 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Vifa1g05686 246 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Vifa1g05686 246 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Vifa1g05686 246 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Vifa1g05686 246 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05686 Vifa-Chr1 881005581 881007397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05686 7 244 Expansin Gene Family AT2G03090 75.610 1.49e-135 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05686 K20628 - gmx:100790170 441.81