Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05684 ATGTCAAGCACCACACAAGTTATTACATGCAAAGCTGCGATATGTTGGGAGGTTGGAAAACCAGCAACAGTAGAAGAAATACAAGTAGATCCACCAAAAGCAACAGAAGTTCGAGTTAAGATGCTTTGTGCTAGTCTCTGCCACACAGATATCTCAAGCATTCAAGGATTTCCACATAATAAATTCCCCCTAGCACTTGGACACGAAGGAGTAGGTGTTGTGGAGAGTGTTGGAGATGAAGTGAAAAATCTGAAAGAAGGGGATCTCATAATTCCAACATATGTAGGAGAGTGTAAAAAATATGAGAATTGTGTTTCAGTGAAAACCAATCTTTGTCTCACATATCCTGTGAGATTCACTGGCCTAATGCCTGATAACACTTCAAGGTTGTCCATTAGAGGACAAAGATTATATCATGTTTTGAGTTGTGCTACATGGTCAGAGTATGTGGTTGTTGATGTCAACTATCTACTCAAAGTTGATCCAAGCATTAATCTAGCTTATGCAAGTTTTATCTCATGTGGTTTTGCAACTGGTTATGGAGCTGCTTGGAAGGAAGCTAGGGTTAAAAGTGGTTCAACTGTTGCTGTTTTCGGTCTTGGAGCTGTTGGATTAGGGGCTATAAGTGGAGCAAAAATGATGGGAGCAAGTAAAATAATTGGAGTTGACAAAAATGAAATGAAGAGAGAAAAAGGAGAAGTTTTTGGACTGACCCATTTTATAAATCCAAGTGGTTCTGATAAATCTGCTTCAGAATTGGTCAAAGAAGTAAATGGTGGAATTGGTGTGGATTACTCTTTTGAGTGCACTGGAGTTCCTTCTTTGCTTAATGTGTCAATTGAAGCCACAAAATTGGGAACAGGTAAAACAATAGCTATTGGTTCAGGAGTTGAAAATATTGTTCCACTTGATCTTATTGCAATTATATTCGGTAGAACATTGAAAGGTTCTGTTTTTGGAGGACTAAAAACTATTTCAGATCTTTCCATTGTAGCAGATAAATGTCAGAAAGAGGAACTCCCTCTTCATGAGCTGCTCACCCATGAGGTGCCACTGTCGGAAATAAACAAAGTATTTGAGCTATTGAAGCAACCTAATTGTGTTAAAGTTGTCATCAAGATGTGA 1125 0.384 MSSTTQVITCKAAICWEVGKPATVEEIQVDPPKATEVRVKMLCASLCHTDISSIQGFPHNKFPLALGHEGVGVVESVGDEVKNLKEGDLIIPTYVGECKKYENCVSVKTNLCLTYPVRFTGLMPDNTSRLSIRGQRLYHVLSCATWSEYVVVDVNYLLKVDPSINLAYASFISCGFATGYGAAWKEARVKSGSTVAVFGLGAVGLGAISGAKMMGASKIIGVDKNEMKREKGEVFGLTHFINPSGSDKSASELVKEVNGGIGVDYSFECTGVPSLLNVSIEATKLGTGKTIAIGSGVENIVPLDLIAIIFGRTLKGSVFGGLKTISDLSIVADKCQKEELPLHELLTHEVPLSEINKVFELLKQPNCVKVVIKM 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05684 374 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Vifa1g05684 374 FunFam alcohol dehydrogenase 1-like isoform X1 18 178 - -
Vifa1g05684 374 CDD liver_alcohol_DH_like 8 373 - -
Vifa1g05684 374 Gene3D - 179 317 - -
Vifa1g05684 374 Pfam Zinc-binding dehydrogenase 202 323 IPR013149 -
Vifa1g05684 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 335 IPR036291 -
Vifa1g05684 374 PANTHER ALCOHOL DEHYDROGENASE 6 366 - -
Vifa1g05684 374 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Vifa1g05684 374 SUPERFAMILY GroES-like 4 190 IPR011032 -
Vifa1g05684 374 Gene3D - 13 369 - -
Vifa1g05684 374 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05684 Vifa-Chr1 880169950 880171840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05684 35 366 Monolignol Biosynthesis Gene Families AT2G21730 25.000 2.75e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05684 K00121 - gmx:100798341 593.578