Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05676 ATGATGGATGGTGCAATGGAGAAAAACTCAAGTGATGAGATATTTGAATTGCCACCTGGATTTAGGTTTCACCCAACAGATGAAGAACTCATAACTCATTATCTTTCTCAAAAAGTTCTTGATAATTGCTTTTGTGCTTTAGCCATTGGTGAAGTTGATTTAAACATGTGTGAGCCTTGGGATTTGCCTTGGATGGCTAAAATGGGTGAGAAAGAGTGGTATTTCTTTTGTGTGAGAGACAGAAAATATCCTACTGGTCTAAGAACAAATAGGGCCACATGTGCTGGATATTGGAAGGCAACAGGTAAAGACAAAGAAATTTATAGAGAGAAGACATTAATTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGTGTAAAAACAAATTGGGTCATGCATGAATATAGATTAGAGGACACATTTTCTTTGCAAAATACATCCAAAAGAGCCATGAGGGAATGGTCTATATGCAGAGTTTTTGAGAAAAGTTCAATTGAAAACAAAATGCAAATTCAAGATTTGGCAAGGTTCAATTCAAATGGAAAAGAACAACTACCTCCATTGATGGATTCATCACCATACAACAATAATGAAACAAAAACAACTATAGGAGATTCATCACATGTGACATGTTTCAGTGACAACAACAACCTAGTTGATGATAGATTCGAAAATCCTATGTTAACATCCTCATATTCTTCAAACCTTTCTTATGATACTATTTCCCCAGTCTCATGGACCCAAAATTTGTCCCACCAATCGACACAAATTGGAAATTCATCACAATCCTCAGAAGAATCCATGTTGAAGATGTTGATTGAAAATAATGAGACAAAAAATCAAAAAGATCATAAATGTGACTATGATGTTGATGTTGATATTGATATTTCAACTATGATGTATAATAATGAAATGTTTCAAAGATCTTATGTGAATGAAGAATATTCAGAAGGTTCTATAGGACATTTTGATAATGGTTGCTTATGGAATATCTGA 1011 0.3393 MMDGAMEKNSSDEIFELPPGFRFHPTDEELITHYLSQKVLDNCFCALAIGEVDLNMCEPWDLPWMAKMGEKEWYFFCVRDRKYPTGLRTNRATCAGYWKATGKDKEIYREKTLIGMKKTLVFYKGRAPKGVKTNWVMHEYRLEDTFSLQNTSKRAMREWSICRVFEKSSIENKMQIQDLARFNSNGKEQLPPLMDSSPYNNNETKTTIGDSSHVTCFSDNNNLVDDRFENPMLTSSYSSNLSYDTISPVSWTQNLSHQSTQIGNSSQSSEESMLKMLIENNETKNQKDHKCDYDVDVDIDISTMMYNNEMFQRSYVNEEYSEGSIGHFDNGCLWNI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05676 336 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
Vifa1g05676 336 FunFam NAC domain-containing protein 100-like 26 171 - -
Vifa1g05676 336 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Vifa1g05676 336 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 266 - -
Vifa1g05676 336 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Vifa1g05676 336 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05676 Vifa-Chr1 878510012 878512107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05676 16 335 NAC Transcription Factor Family AT5G07680 52.000 1.31e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g05676 NAM 2.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05676 - - gmx:100781383 419.083