Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05675 ATGGAAATGGTAGATTTTGATTGGGGTTATGATATACTTGGAGATGCGAGTAATGGTTTTCAAGTTAACAATGCTGTAACAGGAAGTGGGTATGGTTCATCTTTCTCTTTGATTTTGGATAGAGAAAGAGAAATGCATGTGAAAGCACCTGCAAAAATGGAGCAAAAAGGTGTGTCTACCGAGAGAACTGCTGAAGCTTTGAAGAATCACAGTGATGCGGAGAGAAGAAGAAGAGCGAGAATTAACTCACATCTCGATACACTTCGAAGTGTCATTCCAGGTGCTTTGAAGATGGACAAAGCATCATTACTCGGTGAAGTTATTCTACATTTAAAAGAGGTAAAAAGAAACGCGACACAAGCGTGTGAAGGTTTGATGATACCAAAGGACAACGATGAAATAAGCGTTGAAGAACAAGAATGTGGATTACATGGTTTTCCTTATTCAATAAAAGCATCAGTGTGTTGTGAGTATCAACCTGGTTTATTGTCTAGTATAAGACAAGCACTAGAGGCTCTTCGTCTAGTAATCATGAAAGCGGATATTGCGACTTTTGGTGGAAGAATGAAGAATGTGTTTGTTGTAATTAGTTGTGAGGAACAGAATTTTGATGATGCTGAATATAGACAGTTTCTTGCTGGTTCTGTTCATCAAGCTCTTAAGTCTGTGGTTAGTAGATTTTCGGTTTCGCAGGATATGTTAGGAGCTAGGAAAAGGAGGAGGGTTTCTATATTTAGTTCTTCATCTTTAGAAGATTTCTTATAA 765 0.3791 MEMVDFDWGYDILGDASNGFQVNNAVTGSGYGSSFSLILDREREMHVKAPAKMEQKGVSTERTAEALKNHSDAERRRRARINSHLDTLRSVIPGALKMDKASLLGEVILHLKEVKRNATQACEGLMIPKDNDEISVEEQECGLHGFPYSIKASVCCEYQPGLLSSIRQALEALRLVIMKADIATFGGRMKNVFVVISCEEQNFDDAEYRQFLAGSVHQALKSVVSRFSVSQDMLGARKRRRVSIFSSSSLEDFL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05675 254 MobiDBLite consensus disorder prediction 58 76 - -
Vifa1g05675 254 CDD ACT_UUR-ACR-like 153 195 - -
Vifa1g05675 254 MobiDBLite consensus disorder prediction 51 76 - -
Vifa1g05675 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Vifa1g05675 254 Pfam Helix-loop-helix DNA-binding domain 69 113 IPR011598 GO:0046983
Vifa1g05675 254 PANTHER TRANSCRIPTION FACTOR BHLH30 46 246 IPR045847 GO:0003700|GO:0006355
Vifa1g05675 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 116 IPR036638 GO:0046983
Vifa1g05675 254 SMART finulus 71 120 IPR011598 GO:0046983
Vifa1g05675 254 Gene3D - 59 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05675 Vifa-Chr1 878496871 878497717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05675 51 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.624 4.13e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g05675 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05675 - - aprc:113859663 385.956