Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05673 ATGGCGATGATGCAAGGGGTACAAAAGAACACCCTCTACGTCGGCGGTTTAGCGGAAGAGGTCAACGAATCCATCCTTCACGCAGCGTTCATACCATTCGGAGACATTAAGGATGTCAAGACTCCTCTGGATCAAGCCACTCAAAAGCATCGTTCCTTCGGCTTCGTCACTTTCCTTGAAAGAGAAGACGCTTCCTCCGCCATGGATAATATGGACGGTGCTGAACTATATGGTCGTGTCCTCACCGTTAATTATGCTCTTCCTGAGAAAATTAAGGGTGGTGAACAGGGATGGGCTGCTCAACCAATTTGGGCGGATGCGGATACTTGGTTTGAAAGGCAGCAACAGGAGGAGGACATGCGTCGCCTTGAAGCAGAGAATAAAGCTGCAATGCTGGCTGCTGAAGAACTGCACAGGAAGCAAGTAGCTGAAGAGCGAGAAGGGGAGAAGGAGGAAATTGAGATCAAGGATGATCCTATGGCAAGGGCTAATGCAGAGGTTGTTGCAAATTGA 513 0.4912 MAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASSAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAQPIWADADTWFERQQQEEDMRRLEAENKAAMLAAEELHRKQVAEEREGEKEEIEIKDDPMARANAEVVAN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05673 170 FunFam Peptidyl-prolyl cis-trans isomerase 2 155 - -
Vifa1g05673 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Vifa1g05673 170 PANTHER ATPASE E1 2 169 - -
Vifa1g05673 170 MobiDBLite consensus disorder prediction 141 170 - -
Vifa1g05673 170 CDD RRM_PPIE 12 86 IPR034168 GO:0003723
Vifa1g05673 170 MobiDBLite consensus disorder prediction 141 161 - -
Vifa1g05673 170 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Vifa1g05673 170 Gene3D - 3 146 IPR012677 -
Vifa1g05673 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Vifa1g05673 170 SMART rrm1_1 11 84 IPR000504 GO:0003723
Vifa1g05673 170 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05673 Vifa-Chr1 876834952 876836427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05673 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.28e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05673 - - gmx:100809447 304.679