Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05658 ATGGATCGGAGCTCTTTCTCCCCGCGAACCAGGAACACCCGACCCAAGTCCGACATATACTCTACTTTCGTAGTTCATGACGATGCCGATGACGGCGAAACTAACCGGCGCCGGAAACCCGCCAACGCGGAAGTACAGGAAGATCCATACTCAACAATGGTGTTCAAAGACAACGGTCACAATGACGAAGACGACGAAGATTCCTTTCTCCCTCCGCTTCTCAAGCGTCTCCCCAAGGACTTCGGGGGCGGAGCATCGATGGACTACGACGATGACGATGAATCTGGTGATTTTGGTACTATGATCGTGAAGAGCGATCGAGGCCGGCAGGGAGATCGGTCATCTGCCGGCGTGGCCTTACCGGTGGCCCCGACATGGAAGACTGGGAGTTCTTCTCAGGTGAATCCTTTGAACAGAAGAGACGAAGAGGATGATGAAGATGATGACGGTGGCGGGTTTTCAACTTTTGTTATGCGTCCGACGCCGAGGACTGGCGAAACAGAGTCTGTCGGTGGGACAATGGTGCGGCGGACAAGCAGTAACGAAGGTGGAGGTTCGACGATGGAGAGGGCGATTGCGAGTATGCAGGGCGTGGGAGAGTTTGGGAAGCAGAGGAAAGGAAGTGGATCTTCACATAAGGAAGAGGGAAAGCAACACTCCTTAGCCACTAAGGTATCAACGAGTTCCATCCCTGATAGTGTTATCAGAGAGGACCCTACAATCAAATATGAGTTACTCAATGAACTTGGGAAGGGTTCCTATGGTGCTGTTTACAAAGCCAGGGATTATAGAACCTCTGAGATGGTTGCTATCAAAGTCATATCATTATCTGAAGGGGAGGAGGGATACGAGGAAATTCGTGGTGAGATTGAGATGTTACAACAGTGTAATCATCCTAATGTTGTCCGTTATCTTGGAAGCTATCAAGGAGAAGAGTATCTTTGGATAGTGATGGAATACTGTGGTGGTGGTAGTGTTGCTGATCTGATGAATGTGACTGATGAAGCACTGGATGAGAGTCAAATAGCATATATTTGCAGAGAGGCGCTTAAGGGACTTGACTATTTACACTCAATTTTTAAAGTCCATAGAGACATTAAAGGTGGAAATATCTTATTAACTGAACAAGGAGATGTCAAACTAGGCGATTTTGGCGTTGCTGCACAGCTTACTAGGACTATGTCAAAGCGCAATACGTTCATTGGAACCCCTCATTGGATGGCTCCGGAAGTCATTCAGGAAAGTCGCTATGATGGAAAGGTAGATGTCTGGGCTCTTGGCGTGTCTGCAATTGAAATGGCAGAGGGTGTACCTCCAAGATCATCAGTGCATCCGATGAGGGTTTTATTCATGATATCCATCGAACCAGCTCCAATGCTTGAGGATAAAGAAAAATGGTCTTTATATTTCCATGATTTTGTTGCAAAGTGCCTGACCAAAGAACCTCGTCTCCGCCCTGCTGCATCTGAGATGTTGAAGCACAAATTTTTTGAAAAATGGAAAATTGGATCTGCTGTAATGTATACAAAACTAGAAAAGGCAAGGCAAGTCAGGGCTTCAATGGCTTTACAGGTGCAATCTCTCGCTCCTGCTGCAGCAGGAGAGCAGGAGCCAATGCTAGCTTCCATACTAAATGACGAATATGGAGATACTCTTCCATCCAGACCACAGAGCATAAGCGTTGATGAAGCAGCTTATATCTCATCACATGGAACTATGGGGAAGTTGCAAAAGGTGGATGAGGATGACAATACTGAAGGTAACTTTGGCACTGTGATAATCCATGGGAATGAATTATCTAAGATCAGACAGGATGTCGATTCTGCTAGTTATAAATCTGCTTTCGCCAGCAACACAGGAGGCACATTTTCTGACCTTAGGGTTGAGAGTCTAAAAGTTGGCGACATAAACGCTGCCTCTTTTAGGGGATCTGGTCCTACTACAGATACCTTACAATCGTCTTTACCATCTGTTAGTAATTCAAATGAGCAGAACCTCAAAATAAAAGGCACTCATCGAGCACAAGCTGGAATTGGTAGTGATATTAGGAATAATACACTTCAGAATGAAACAGTCAGCCGCAAATTTGCTTTACAAGATAAGCTTTGGTCCATTTACGCCGCTGGTAATACAGTGCCCATACCGTTCTTAAGGGCGACAGATATATCACCTATTGCTCTCCTTTCAGACAATGTGCTTGGCGGCATGCAACAGGATACAGGTGGAACTAAAACAGTAGAAGCATTGCAAGAACTTTTTAGTGGCGACGGACAGTCCAAAAAGGGTCGTAGAGGAATAAATGAGCATATGCCACTTCCTCCAAGCATTTGCCAAAGGTTGACGTCAAGTTCTACTCTAATGAATCTGGCACAGGCTTTAGCTTATCATAAGATGTGTTACGAAGATATGCCACTACAGGAATTGCAAGCAACGCAGGAGCAGCGAACTATTCAAAATCTCTCTGATACACTTAGAACCATTCTTCGGTTGTAG 2493 0.4557 MDRSSFSPRTRNTRPKSDIYSTFVVHDDADDGETNRRRKPANAEVQEDPYSTMVFKDNGHNDEDDEDSFLPPLLKRLPKDFGGGASMDYDDDDESGDFGTMIVKSDRGRQGDRSSAGVALPVAPTWKTGSSSQVNPLNRRDEEDDEDDDGGGFSTFVMRPTPRTGETESVGGTMVRRTSSNEGGGSTMERAIASMQGVGEFGKQRKGSGSSHKEEGKQHSLATKVSTSSIPDSVIREDPTIKYELLNELGKGSYGAVYKARDYRTSEMVAIKVISLSEGEEGYEEIRGEIEMLQQCNHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTDEALDESQIAYICREALKGLDYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGVPPRSSVHPMRVLFMISIEPAPMLEDKEKWSLYFHDFVAKCLTKEPRLRPAASEMLKHKFFEKWKIGSAVMYTKLEKARQVRASMALQVQSLAPAAAGEQEPMLASILNDEYGDTLPSRPQSISVDEAAYISSHGTMGKLQKVDEDDNTEGNFGTVIIHGNELSKIRQDVDSASYKSAFASNTGGTFSDLRVESLKVGDINAASFRGSGPTTDTLQSSLPSVSNSNEQNLKIKGTHRAQAGIGSDIRNNTLQNETVSRKFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMQQDTGGTKTVEALQELFSGDGQSKKGRRGINEHMPLPPSICQRLTSSSTLMNLAQALAYHKMCYEDMPLQELQATQEQRTIQNLSDTLRTILRL 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05658 830 ProSitePatterns Protein kinases ATP-binding region signature. 249 272 IPR017441 GO:0005524
Vifa1g05658 830 MobiDBLite consensus disorder prediction 206 220 - -
Vifa1g05658 830 Pfam Protein kinase domain 243 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05658 830 MobiDBLite consensus disorder prediction 57 73 - -
Vifa1g05658 830 SMART serkin_6 243 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05658 830 CDD STKc_MAP4K3_like 242 497 - -
Vifa1g05658 830 Gene3D Transferase(Phosphotransferase) domain 1 240 530 - -
Vifa1g05658 830 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 225 545 - -
Vifa1g05658 830 ProSiteProfiles Protein kinase domain profile. 243 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05658 830 MobiDBLite consensus disorder prediction 200 225 - -
Vifa1g05658 830 MobiDBLite consensus disorder prediction 642 662 - -
Vifa1g05658 830 MobiDBLite consensus disorder prediction 1 187 - -
Vifa1g05658 830 SUPERFAMILY Protein kinase-like (PK-like) 242 498 IPR011009 -
Vifa1g05658 830 MobiDBLite consensus disorder prediction 21 44 - -
Vifa1g05658 830 MobiDBLite consensus disorder prediction 160 187 - -
Vifa1g05658 830 FunFam Aurora kinase A 236 324 - -
Vifa1g05658 830 FunFam serine/threonine-protein kinase dst1 isoform X1 240 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05658 Vifa-Chr1 875598413 875612302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05658 7 830 MAP Kinase Kinase Kinase Kinase AT1G69220 58.713 0.0 846
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Pl Vifa1g05658 Pkinase 1.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05658 - - gmx:100804995 1264.6