Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05641 ATGTCTCCAGAATTTCAGCTTCTTCTTTTTCCTGACCTTGTTCACATTCATCCTCTCACTCTCAGTTTTCAAACTGCTTTGTGTTTTGTTTTGTTTTTTTTGTTTTTTCTATTCTGGTTAACTCCAGGTGGGTTTGCTTGGGTTTTTTATAACAAGGCTTCGAGTTCGGCTCGGTCTGTTATTCCTGGTCCGTCTTTTTCCGGTTTGTTTGGGCTCTTGTCAGGCCAAACTCCTCACCGTGTTTTAGCCAAGCTCGCTCGGAGTCACCGAGCTGAGTCGCTGATGGCTTTTTCTGTTGGTCTGACTCGGTTTGTTATTTCCAGTGAACCGGAAACTGCGAAGGATATTCTTTGCAGTTCTGCTTTTGGTGATAGGCCGGTTAAGGAATCGGCTTACGAGCTGTTGTTTCATAGGGCAATGGGTTTTGCACCGTATGGTGAGTACTGGAGGAATCTGAGAAGGATTTCTTCGACCCATTTGTTTTGTCCTAGAAGGATAAACGGGTTTGAAGGTTTTAGGAGTGAGGTGGGGTTAAAAATGGTTAAGAGGATAGAGTTTTTGATGGGTGAAATGGGTAGTGTTGAGGTGAAAAAAGTTCTTCATTTTGGGTCACTTAACAATGTGATGATGACTGTGTTTGGGAAGTGTTATGATTTTTTTGATGGGGAGGGTTTTGATCTTGAGGAAATGGTGAGTGAAGGGTATGAGTTGTTGGGTGTTTTTAACTGGAGTGACCATTATCCTCTTTTTGGTTGGTTGGATTTGCAAGGTGTTAGGAAAAGGTGTAGGGTTTTGGTTACTAAGGTTAATGCATATGTTGGGAAAATAATTGAGGAACATAGAATGAAGAGAATGTCTGAAGGAAAAGGTTTAGTTGGTGATTTTGTGGATGTTTTGCTTGATTTGGAAGAAAAAGACAAACTCAGTGATTCAGACATGATTGCAGTACTTTGGGAAATGATTTTCAGAGGAACTGACACGGTAGCGATTTTACTGGAATGGATTCTGGCAAGGATGGTTCTTCATCCAGAGATACAACAAAAAGTACAGGAAGAAATTGATGGTGTAGTTGGAAATTCCGACGTTATTAGTGATGTTGATGTTCAAAACATGCGTTATCTGCAGTGCATTGTGAAAGAGGTTTTAAGGGTTCATCCACCAGGACCACTTTTATCATGGGCGCGTTTAGCAGTGCATGATGTTATGGTAGGTGACAAGTTCATTCCGAAAGGTACAACTGCCATGGTTAATATGTGGGCTATAACACATGATGAAAAGGTGTGGAATGAGCCTGAGGTGTTTAATCCTGAGAGGTTTATGACCGAAGATTTTAGCATTTTGGGTTCTGATTTGAGGTTGGCACCTTTCGGAGCTGGGAGAAGAGTTTGTCCGGGAAAAGCTATGGGTTTAGCTTCTGTCCATCTTTGGTTAGCTCAGTTGCTTCAAAGGTTCAAATGGGTTCAAGCTGATGATTCTCCTGTTGATTTGGATGAATGTCTTAAGCTTTCTATGGAGATGAAATCGCCACTTGTGTGCAAGGTTGTTCCTAGAACCTAG 1557 0.4162 MSPEFQLLLFPDLVHIHPLTLSFQTALCFVLFFLFFLFWLTPGGFAWVFYNKASSSARSVIPGPSFSGLFGLLSGQTPHRVLAKLARSHRAESLMAFSVGLTRFVISSEPETAKDILCSSAFGDRPVKESAYELLFHRAMGFAPYGEYWRNLRRISSTHLFCPRRINGFEGFRSEVGLKMVKRIEFLMGEMGSVEVKKVLHFGSLNNVMMTVFGKCYDFFDGEGFDLEEMVSEGYELLGVFNWSDHYPLFGWLDLQGVRKRCRVLVTKVNAYVGKIIEEHRMKRMSEGKGLVGDFVDVLLDLEEKDKLSDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPEIQQKVQEEIDGVVGNSDVISDVDVQNMRYLQCIVKEVLRVHPPGPLLSWARLAVHDVMVGDKFIPKGTTAMVNMWAITHDEKVWNEPEVFNPERFMTEDFSILGSDLRLAPFGAGRRVCPGKAMGLASVHLWLAQLLQRFKWVQADDSPVDLDECLKLSMEMKSPLVCKVVPRT 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05641 518 SUPERFAMILY Cytochrome P450 61 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05641 518 Pfam Cytochrome P450 69 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05641 518 Gene3D Cytochrome P450 49 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05641 518 PANTHER CYTOCHROME P450 78A7-RELATED 20 518 - -
Vifa1g05641 518 FunFam Cytochrome P450 78A5 53 517 - -
Vifa1g05641 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 456 465 IPR017972 GO:0005506|GO:0016705
Vifa1g05641 518 PRINTS E-class P450 group I signature 463 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05641 518 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05641 518 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05641 518 PRINTS E-class P450 group I signature 453 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05641 518 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05641 518 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05641 518 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05641 518 CDD CYP78 90 510 - -
Vifa1g05641 518 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05641 518 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05641 518 PRINTS P450 superfamily signature 454 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05641 518 PRINTS P450 superfamily signature 463 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05641 Vifa-Chr1 874562967 874564651 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05641 1 518 Cytochrome P450 AT1G13710 63.289 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05641 K20619 - qsu:111986572 705.671