Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05606 ATGGAAGAAACACAAGGCGAGTATTGTGTTTCCGATCCACCCGAGTATGATTTTAACAGGCAAGGGAATCATAGGACTGGTGTAACAGGTCTGAAGAAGAGAGGTCATGTGAGTCGTTCTTGGATAAAAATCGATCAGGATGGAAATTCTGAGGTTGTGACGCTTGACAAGGCTACTATTATGAGAGATTGTTCTTTGCCTTCGAGAGATCTTCGATTATTGGATCCCATGTTTATTTATCCTTCTTCCATATTAGGAAGGGAGATGGCTATTGTTGTTAACCTTGAGCAAATCAGGTGTATAATCACTGCGGATGAAGTGATTCTCATGAATTCACTGGATGGGACTGTTGGTCGGTATAGGTCACAGTTATGCAATCGGCTCAGGAAAGAAAAGTCTGATGATCTTCCCTTTGAATTTAGGGCGCTGGAGTTGGCTCTGGAATTGACATGCACATCTTTAGATGCACAGGTAAATGAATTAGAAATGGAAATATATCCCGTGCTAGATGAACTGGCCTCATCTATCAGTACTCTCCTTCTGGAACGTGTTCGAAGATTCAAAGGTCACCTTCTTGCTTTGACTCAGCGGGTTCAGAAGGTTCGTGATGAAATAGAACATCTCATGGATGACGATGGTGACATGGCTGAGATGTGCCTGACTGAGAAAAGGAGAAGATCAGATGCCTACCCTTCAAGTGATTGTAATCTAAGCCGTACATCATCAGGCAAAGTGATTTCGAAATCAGATCCTACTTCACCGGAGCAGTCAGTTAGTGGCTTACAGATGTTGCGTAGGACTTTCAGCAGCAGTATCGGAAATTCAAGTAAATATGGTAGTACAACAAGTTCATCTGATAATGGAGAAAGGATTCAGCCACTGGAAATGTTGCTGGAAGCATACTTTATCGTCATTGATAATACTCTCAATACATTATCGTCGCTCAAAGAATACATAGACGACACTGAAGATTTTCTCAACATAAAACTGGGGAATATTCAAAACCTCCTAATAAAGTTTGAGATGCTTCTTACAGCAGCCACAATGGTGGCTGCAATATTTGCCGCAGTGACAGGAGTATTTGGAATGAACTTTAAAACCTCAGTTTTTGACTACTCATCTGGATTCAACTGGGTTATGGTAATTACTGGAATTGGTTGTGTAGCATTGTATTTCTCCTTACTATCCTATTTTAGATACAAAAAAGTGCTTCCAGAATAA 1221 0.4079 MEETQGEYCVSDPPEYDFNRQGNHRTGVTGLKKRGHVSRSWIKIDQDGNSEVVTLDKATIMRDCSLPSRDLRLLDPMFIYPSSILGREMAIVVNLEQIRCIITADEVILMNSLDGTVGRYRSQLCNRLRKEKSDDLPFEFRALELALELTCTSLDAQVNELEMEIYPVLDELASSISTLLLERVRRFKGHLLALTQRVQKVRDEIEHLMDDDGDMAEMCLTEKRRRSDAYPSSDCNLSRTSSGKVISKSDPTSPEQSVSGLQMLRRTFSSSIGNSSKYGSTTSSSDNGERIQPLEMLLEAYFIVIDNTLNTLSSLKEYIDDTEDFLNIKLGNIQNLLIKFEMLLTAATMVAAIFAAVTGVFGMNFKTSVFDYSSGFNWVMVITGIGCVALYFSLLSYFRYKKVLPE 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05606 406 CDD Mrs2_Mfm1p-like 41 403 IPR039204 -
Vifa1g05606 406 MobiDBLite consensus disorder prediction 228 260 - -
Vifa1g05606 406 Gene3D Magnesium transport protein CorA, transmembrane region 116 337 - -
Vifa1g05606 406 MobiDBLite consensus disorder prediction 231 260 - -
Vifa1g05606 406 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g05606 406 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 342 394 IPR045863 -
Vifa1g05606 406 Gene3D - 28 112 - -
Vifa1g05606 406 FunFam Magnesium transporter MRS2-1 29 112 - -
Vifa1g05606 406 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 22 404 IPR039204 -
Vifa1g05606 406 Coils Coil 191 211 - -
Vifa1g05606 406 Gene3D Magnesium transport protein CorA, transmembrane region 344 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05606 Vifa-Chr1 868275362 868277085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05606 17 405 MRS2 Gene Family AT2G03620 65.578 1.06e-170 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05606 K16075 - gmx:100803935 612.453