Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05580 ATGTTTTCTTGTTATTTGAGTTCAATTATCATCAAATGGACTTCCTTTACTCAATTCATCTTCTTCTTCTTCCTTCTCTTCTTTACCTCTCCATACGACGCCGTTTCACCCTTCTCCGACAAATCTACTCTCCTCCGTCTCAAATACTCCATCTCCGACCCCGCCGGATTACTCTCTTCCTGGAACCCTTCTTCCCCCCACTGTTCCTGGTATGCTGTCCGCTGTGATTCTAACTTCCGTGTCGTTTCTCTCAACATCACCGGTAACGGCGCTCGCGCTCATGCTCACCGGAGTTCCACTTCCACTTCACTTCCTTGCTCCGATTTTGGTATGTTTCCTCTTTACGGATTCGGGATTAGGAGAAGTTGTGTTGGTGTTAAGGGTTCTTTGTTAGGAAAGTTTCCATCTTTTATCGTTGACTTGACTGAGCTTAGGGTTCTTTCTTTACCTTTCAATGGCTTGGAGGGTTTAATTCCTGATGAGATTTGGAGTATGAAGAAACTCGAAGTTCTTGATTTAGAAGGTAATTTTATTACTGGCCATCTTCCTTTTCATATTCAAGGTTTGAAAAAATTGAGGCTTTTGAATTTGGGGTTTAATAACATTCTTGGAGTCGTGCCTAGTGTTTTATCTTCTCTCGATAGTTTGGAGGTTTTGAATTTAGCTGCTAATGGTTTGAATGGTTCTGTTCCTGCTTTTGTTGGGAAGCTTAGAGGGGTGTATTTGTCTTTTAATCAATTTAGTGGAGTTATTCCGGAGGAGATTGGTGAGAACTGTGGGAAGCTTGAGCATTTGGATTTGTCTGGTAACTCTTTGATTCAAGCGATTCCCAAGAGTTTGGGGAATTGTGTTAGGTTGAGGACACTTTTGTTGTATTCAAATTTGTTGGAAGAGGGTATTCCTGTTGAATTTGGAAACCTTACGAGTCTTGAGGTGTTGGATGTTTCAAGGAATACGCTTAGTGGTTCTATTCCTGGCGCGCTTGGGAATTGTAAAGAGCTTTCTGTTGTTGTGCTCTCCAACCTTTTCGATCCGGTTGGGGATGCTGAGTTTGTTACTTTGAACGATGAGTTGAATTATTTTGAAGGTTCAATGCCTGAGGAAGTTGTGTCACTCCCTAAGTTAAGGATTTTGTGGGCTCCCATGGTGAATTTGGAAGGAAGTTTTCCTAGGAATTGGGGTGCTTGCGGTAACTTGGAGATGGTTAGTTTGGCTCAGAATTTCTTCACCGGAGAGTTCCCCAACCGGCTTGGTTTCTGCAAGAAGCTGCATTTTCTTGACCTGAGCTCAAACAATCTTACCGGGGAGCTTTCGAAGGAACTTCATGTTCCATGTATGACTTTGTTTGATGTTAGTGGAAACATTTTATCTGGTTCAGTTCCTGATTTCTCCAATAATGTTTGTCCCCCCTTTCCTTCCTGGAATGGGAATCTGTTCCAAACTGGCGACATTGCATCTCCTTATGCATCATATTTCTCATCAAAAGCTCAGGAGAGAACCCTTTTCGCATCTTTAGGGGGAGTTGGTCTTTCAGTTTTTCACAACTTGGGCCAAAACAACTTCAGTGGCATTCAATCATTGCCAATAGCAGGAGACAGGATGGAGGAAAAGAGTGGTTACACCCTTCTTGTCGATCAGAACGAACTCACAGGACTGTTTCCTGCATATTTGTTAGAGAAATGTGATGGATTAGATGCATTGCTTTTGAATCTGAGTTTTAATAGACTCTCTGGTGAGATTCCTTCTAATATTAGTAGAATGTGTAAATCATTGAAAGTTTTGGATGCATCTGGAAATCGAATTTCAGGAGAAATTCCCTTTACTTTAGGGGATTCGGTTTCTCTTGTTTCCTTGAACCTCAGTAAAAACCGGTTACAAGGTCAAATTCCCGCCAGCCTCGGACAGATGAAGGATCTGAAGTTCCTCTCTTTGGCTGGTAATAATTTGAGTGGCCCAATTCCTTCCAATCTGGGACAGTTGTACTCTTTACAAGTCTTGGACCTTTCTACAAACTCTATTACTGGTGAGATTCCAAAGTTTATTGAGAACATGAGAAATCTGACCGACGTTTTGCTCAATAACAACAACCTTTCTGGACACATTCCTGCTGGTTTGGCAAATGTTACTACACTCTCTATATTAAATGTGTCTTTCAATAACTTATCGGGGTTCTTGCCATCAAATAGTAGCTTGATCAAATGCAGCAGTGCTGTTGGGAATCCGTTTCTAAGTTCCTGTCGTGGAGTTTCTCTAACTGTGCCATCGGCAAATCAACAAGGGCAATTTGATGACAATTCTTCTAATACTGCACAATCTACTCAAAAAAATAATGACAATGGTTTCAGTGCTATTGAAATAGCATCTATTACTTCTGCTTCAGCCATTGTTTCTGTTCTTATAGCCCTCATTGTTCTGTTCTTTTTCACACGAAGGTGGAAGCCGAATTCCAGAGTTGGTGGTTCTGCCAAAAGAGAAGTTACAGTGTTTACTGATATCGGCGTCCCATTGACATTTGAAAATGTTGTCCAAGCCACAGGAAATTTCAATGCAAGCAATTGTATTGGGAGTGGAGGATTTGGTGCAACTTATAAGGCAGAGATATCACAAGGAATCTTGGTGGCAGTGAAACGTCTTTCAGTTGGACGTTTCCAAGGTGTTCAACAGTTTCATGCAGAGATTAAGACCCTTGGAAGGCTTCATCATCCAAATCTCGTTACTTTGATCGGTTACCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATCTTCCAGGTGGTAATCTTGAAAAGTTCATCCAGGAGAGATCCACAAGGGCTGTAGATTGGAAAATTCTTCACAAGATTGCATTGGACATAGCTCGCGCACTTTCCTATCTGCATGATCAATGTGTACCGCGTGTTCTTCACCGCGATGTCAAGCCTAGCAATATCTTGTTGGATGATGATTTCAATGCTTATCTATCCGACTTCGGACTAGCCAGACTTCTTGGAACTTCAGAGACACATGCTACAACCGGAGTGGCAGGAACATTTGGGTACGTTGCTCCTGAATACGCCATGACATGTCGTGTTTCAGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTTGAGCTGCTATCAGATAAGAAAGCATTGGACCCTTCGTTTTCTTCTTATGGTAATGGTTTCAATATTGTGGCATGGGGATGCATGCTCCTGAGGGAAGGAAGGGCAAAAGAATTTTTCACTGCCGGGTTATGGGATGCAGGCCCAGAAAATGATTTGGTAGAGGTTCTTCACTTAGCTGTTGTATGTACTGTTGACTCACTATCAACTAGACCTACAATGAAACAGGTTGTGAAAAGGCTAAAGCAACTTCAACCTCCATCATGCTAG 3384 0.4196 MFSCYLSSIIIKWTSFTQFIFFFFLLFFTSPYDAVSPFSDKSTLLRLKYSISDPAGLLSSWNPSSPHCSWYAVRCDSNFRVVSLNITGNGARAHAHRSSTSTSLPCSDFGMFPLYGFGIRRSCVGVKGSLLGKFPSFIVDLTELRVLSLPFNGLEGLIPDEIWSMKKLEVLDLEGNFITGHLPFHIQGLKKLRLLNLGFNNILGVVPSVLSSLDSLEVLNLAANGLNGSVPAFVGKLRGVYLSFNQFSGVIPEEIGENCGKLEHLDLSGNSLIQAIPKSLGNCVRLRTLLLYSNLLEEGIPVEFGNLTSLEVLDVSRNTLSGSIPGALGNCKELSVVVLSNLFDPVGDAEFVTLNDELNYFEGSMPEEVVSLPKLRILWAPMVNLEGSFPRNWGACGNLEMVSLAQNFFTGEFPNRLGFCKKLHFLDLSSNNLTGELSKELHVPCMTLFDVSGNILSGSVPDFSNNVCPPFPSWNGNLFQTGDIASPYASYFSSKAQERTLFASLGGVGLSVFHNLGQNNFSGIQSLPIAGDRMEEKSGYTLLVDQNELTGLFPAYLLEKCDGLDALLLNLSFNRLSGEIPSNISRMCKSLKVLDASGNRISGEIPFTLGDSVSLVSLNLSKNRLQGQIPASLGQMKDLKFLSLAGNNLSGPIPSNLGQLYSLQVLDLSTNSITGEIPKFIENMRNLTDVLLNNNNLSGHIPAGLANVTTLSILNVSFNNLSGFLPSNSSLIKCSSAVGNPFLSSCRGVSLTVPSANQQGQFDDNSSNTAQSTQKNNDNGFSAIEIASITSASAIVSVLIALIVLFFFTRRWKPNSRVGGSAKREVTVFTDIGVPLTFENVVQATGNFNASNCIGSGGFGATYKAEISQGILVAVKRLSVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRAVDWKILHKIALDIARALSYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWGCMLLREGRAKEFFTAGLWDAGPENDLVEVLHLAVVCTVDSLSTRPTMKQVVKRLKQLQPPSC 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05580 1127 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515
Vifa1g05580 1127 ProSitePatterns Protein kinases ATP-binding region signature. 854 876 IPR017441 GO:0005524
Vifa1g05580 1127 Gene3D Transferase(Phosphotransferase) domain 1 924 1124 - -
Vifa1g05580 1127 Pfam Leucine rich repeat N-terminal domain 39 76 IPR013210 -
Vifa1g05580 1127 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 812 923 - -
Vifa1g05580 1127 Gene3D Ribonuclease Inhibitor 38 236 IPR032675 -
Vifa1g05580 1127 SUPERFAMILY L domain-like 353 464 - -
Vifa1g05580 1127 SUPERFAMILY L domain-like 133 716 - -
Vifa1g05580 1127 SMART serkin_6 848 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05580 1127 SUPERFAMILY Protein kinase-like (PK-like) 829 1119 IPR011009 -
Vifa1g05580 1127 Pfam Protein kinase domain 851 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05580 1127 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 20 523 - -
Vifa1g05580 1127 Gene3D Phosphorylase Kinase; domain 1 812 923 - -
Vifa1g05580 1127 ProSitePatterns Serine/Threonine protein kinases active-site signature. 968 980 IPR008271 GO:0004672|GO:0006468
Vifa1g05580 1127 Gene3D Ribonuclease Inhibitor 346 468 IPR032675 -
Vifa1g05580 1127 ProSiteProfiles Protein kinase domain profile. 848 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05580 1127 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 350 527 - -
Vifa1g05580 1127 SMART LRR_typ_2 636 660 IPR003591 -
Vifa1g05580 1127 SMART LRR_typ_2 189 212 IPR003591 -
Vifa1g05580 1127 SMART LRR_typ_2 213 237 IPR003591 -
Vifa1g05580 1127 SMART LRR_typ_2 141 164 IPR003591 -
Vifa1g05580 1127 SMART LRR_typ_2 684 707 IPR003591 -
Vifa1g05580 1127 SMART LRR_typ_2 259 283 IPR003591 -
Vifa1g05580 1127 SMART LRR_typ_2 307 330 IPR003591 -
Vifa1g05580 1127 SMART LRR_typ_2 165 188 IPR003591 -
Vifa1g05580 1127 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 559 751 - -
Vifa1g05580 1127 Gene3D Ribonuclease Inhibitor 237 343 IPR032675 -
Vifa1g05580 1127 Gene3D Ribonuclease Inhibitor 469 795 IPR032675 -
Vifa1g05580 1127 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 924 1126 - -
Vifa1g05580 1127 CDD STKc_IRAK 854 1122 - -
Vifa1g05580 1127 Pfam Leucine rich repeat 236 296 IPR001611 GO:0005515
Vifa1g05580 1127 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 252 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05580 Vifa-Chr1 864907399 864910782 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05580 39 1127 Receptor kinase-like Gene Family AT3G02130 62.757 0.0 1320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vifa1g05580 Pkinase 3.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05580 - - vum:124828178 1652.11