Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g05580 | ATGTTTTCTTGTTATTTGAGTTCAATTATCATCAAATGGACTTCCTTTACTCAATTCATCTTCTTCTTCTTCCTTCTCTTCTTTACCTCTCCATACGACGCCGTTTCACCCTTCTCCGACAAATCTACTCTCCTCCGTCTCAAATACTCCATCTCCGACCCCGCCGGATTACTCTCTTCCTGGAACCCTTCTTCCCCCCACTGTTCCTGGTATGCTGTCCGCTGTGATTCTAACTTCCGTGTCGTTTCTCTCAACATCACCGGTAACGGCGCTCGCGCTCATGCTCACCGGAGTTCCACTTCCACTTCACTTCCTTGCTCCGATTTTGGTATGTTTCCTCTTTACGGATTCGGGATTAGGAGAAGTTGTGTTGGTGTTAAGGGTTCTTTGTTAGGAAAGTTTCCATCTTTTATCGTTGACTTGACTGAGCTTAGGGTTCTTTCTTTACCTTTCAATGGCTTGGAGGGTTTAATTCCTGATGAGATTTGGAGTATGAAGAAACTCGAAGTTCTTGATTTAGAAGGTAATTTTATTACTGGCCATCTTCCTTTTCATATTCAAGGTTTGAAAAAATTGAGGCTTTTGAATTTGGGGTTTAATAACATTCTTGGAGTCGTGCCTAGTGTTTTATCTTCTCTCGATAGTTTGGAGGTTTTGAATTTAGCTGCTAATGGTTTGAATGGTTCTGTTCCTGCTTTTGTTGGGAAGCTTAGAGGGGTGTATTTGTCTTTTAATCAATTTAGTGGAGTTATTCCGGAGGAGATTGGTGAGAACTGTGGGAAGCTTGAGCATTTGGATTTGTCTGGTAACTCTTTGATTCAAGCGATTCCCAAGAGTTTGGGGAATTGTGTTAGGTTGAGGACACTTTTGTTGTATTCAAATTTGTTGGAAGAGGGTATTCCTGTTGAATTTGGAAACCTTACGAGTCTTGAGGTGTTGGATGTTTCAAGGAATACGCTTAGTGGTTCTATTCCTGGCGCGCTTGGGAATTGTAAAGAGCTTTCTGTTGTTGTGCTCTCCAACCTTTTCGATCCGGTTGGGGATGCTGAGTTTGTTACTTTGAACGATGAGTTGAATTATTTTGAAGGTTCAATGCCTGAGGAAGTTGTGTCACTCCCTAAGTTAAGGATTTTGTGGGCTCCCATGGTGAATTTGGAAGGAAGTTTTCCTAGGAATTGGGGTGCTTGCGGTAACTTGGAGATGGTTAGTTTGGCTCAGAATTTCTTCACCGGAGAGTTCCCCAACCGGCTTGGTTTCTGCAAGAAGCTGCATTTTCTTGACCTGAGCTCAAACAATCTTACCGGGGAGCTTTCGAAGGAACTTCATGTTCCATGTATGACTTTGTTTGATGTTAGTGGAAACATTTTATCTGGTTCAGTTCCTGATTTCTCCAATAATGTTTGTCCCCCCTTTCCTTCCTGGAATGGGAATCTGTTCCAAACTGGCGACATTGCATCTCCTTATGCATCATATTTCTCATCAAAAGCTCAGGAGAGAACCCTTTTCGCATCTTTAGGGGGAGTTGGTCTTTCAGTTTTTCACAACTTGGGCCAAAACAACTTCAGTGGCATTCAATCATTGCCAATAGCAGGAGACAGGATGGAGGAAAAGAGTGGTTACACCCTTCTTGTCGATCAGAACGAACTCACAGGACTGTTTCCTGCATATTTGTTAGAGAAATGTGATGGATTAGATGCATTGCTTTTGAATCTGAGTTTTAATAGACTCTCTGGTGAGATTCCTTCTAATATTAGTAGAATGTGTAAATCATTGAAAGTTTTGGATGCATCTGGAAATCGAATTTCAGGAGAAATTCCCTTTACTTTAGGGGATTCGGTTTCTCTTGTTTCCTTGAACCTCAGTAAAAACCGGTTACAAGGTCAAATTCCCGCCAGCCTCGGACAGATGAAGGATCTGAAGTTCCTCTCTTTGGCTGGTAATAATTTGAGTGGCCCAATTCCTTCCAATCTGGGACAGTTGTACTCTTTACAAGTCTTGGACCTTTCTACAAACTCTATTACTGGTGAGATTCCAAAGTTTATTGAGAACATGAGAAATCTGACCGACGTTTTGCTCAATAACAACAACCTTTCTGGACACATTCCTGCTGGTTTGGCAAATGTTACTACACTCTCTATATTAAATGTGTCTTTCAATAACTTATCGGGGTTCTTGCCATCAAATAGTAGCTTGATCAAATGCAGCAGTGCTGTTGGGAATCCGTTTCTAAGTTCCTGTCGTGGAGTTTCTCTAACTGTGCCATCGGCAAATCAACAAGGGCAATTTGATGACAATTCTTCTAATACTGCACAATCTACTCAAAAAAATAATGACAATGGTTTCAGTGCTATTGAAATAGCATCTATTACTTCTGCTTCAGCCATTGTTTCTGTTCTTATAGCCCTCATTGTTCTGTTCTTTTTCACACGAAGGTGGAAGCCGAATTCCAGAGTTGGTGGTTCTGCCAAAAGAGAAGTTACAGTGTTTACTGATATCGGCGTCCCATTGACATTTGAAAATGTTGTCCAAGCCACAGGAAATTTCAATGCAAGCAATTGTATTGGGAGTGGAGGATTTGGTGCAACTTATAAGGCAGAGATATCACAAGGAATCTTGGTGGCAGTGAAACGTCTTTCAGTTGGACGTTTCCAAGGTGTTCAACAGTTTCATGCAGAGATTAAGACCCTTGGAAGGCTTCATCATCCAAATCTCGTTACTTTGATCGGTTACCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATCTTCCAGGTGGTAATCTTGAAAAGTTCATCCAGGAGAGATCCACAAGGGCTGTAGATTGGAAAATTCTTCACAAGATTGCATTGGACATAGCTCGCGCACTTTCCTATCTGCATGATCAATGTGTACCGCGTGTTCTTCACCGCGATGTCAAGCCTAGCAATATCTTGTTGGATGATGATTTCAATGCTTATCTATCCGACTTCGGACTAGCCAGACTTCTTGGAACTTCAGAGACACATGCTACAACCGGAGTGGCAGGAACATTTGGGTACGTTGCTCCTGAATACGCCATGACATGTCGTGTTTCAGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTTGAGCTGCTATCAGATAAGAAAGCATTGGACCCTTCGTTTTCTTCTTATGGTAATGGTTTCAATATTGTGGCATGGGGATGCATGCTCCTGAGGGAAGGAAGGGCAAAAGAATTTTTCACTGCCGGGTTATGGGATGCAGGCCCAGAAAATGATTTGGTAGAGGTTCTTCACTTAGCTGTTGTATGTACTGTTGACTCACTATCAACTAGACCTACAATGAAACAGGTTGTGAAAAGGCTAAAGCAACTTCAACCTCCATCATGCTAG | 3384 | 0.4196 | MFSCYLSSIIIKWTSFTQFIFFFFLLFFTSPYDAVSPFSDKSTLLRLKYSISDPAGLLSSWNPSSPHCSWYAVRCDSNFRVVSLNITGNGARAHAHRSSTSTSLPCSDFGMFPLYGFGIRRSCVGVKGSLLGKFPSFIVDLTELRVLSLPFNGLEGLIPDEIWSMKKLEVLDLEGNFITGHLPFHIQGLKKLRLLNLGFNNILGVVPSVLSSLDSLEVLNLAANGLNGSVPAFVGKLRGVYLSFNQFSGVIPEEIGENCGKLEHLDLSGNSLIQAIPKSLGNCVRLRTLLLYSNLLEEGIPVEFGNLTSLEVLDVSRNTLSGSIPGALGNCKELSVVVLSNLFDPVGDAEFVTLNDELNYFEGSMPEEVVSLPKLRILWAPMVNLEGSFPRNWGACGNLEMVSLAQNFFTGEFPNRLGFCKKLHFLDLSSNNLTGELSKELHVPCMTLFDVSGNILSGSVPDFSNNVCPPFPSWNGNLFQTGDIASPYASYFSSKAQERTLFASLGGVGLSVFHNLGQNNFSGIQSLPIAGDRMEEKSGYTLLVDQNELTGLFPAYLLEKCDGLDALLLNLSFNRLSGEIPSNISRMCKSLKVLDASGNRISGEIPFTLGDSVSLVSLNLSKNRLQGQIPASLGQMKDLKFLSLAGNNLSGPIPSNLGQLYSLQVLDLSTNSITGEIPKFIENMRNLTDVLLNNNNLSGHIPAGLANVTTLSILNVSFNNLSGFLPSNSSLIKCSSAVGNPFLSSCRGVSLTVPSANQQGQFDDNSSNTAQSTQKNNDNGFSAIEIASITSASAIVSVLIALIVLFFFTRRWKPNSRVGGSAKREVTVFTDIGVPLTFENVVQATGNFNASNCIGSGGFGATYKAEISQGILVAVKRLSVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRAVDWKILHKIALDIARALSYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWGCMLLREGRAKEFFTAGLWDAGPENDLVEVLHLAVVCTVDSLSTRPTMKQVVKRLKQLQPPSC | 1127 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g05580 | 1127 | Pfam | Leucine Rich Repeat | 167 | 189 | IPR001611 | GO:0005515 | |
Vifa1g05580 | 1127 | ProSitePatterns | Protein kinases ATP-binding region signature. | 854 | 876 | IPR017441 | GO:0005524 | |
Vifa1g05580 | 1127 | Gene3D | Transferase(Phosphotransferase) domain 1 | 924 | 1124 | - | - | |
Vifa1g05580 | 1127 | Pfam | Leucine rich repeat N-terminal domain | 39 | 76 | IPR013210 | - | |
Vifa1g05580 | 1127 | FunFam | LRR receptor-like serine/threonine-protein kinase RPK2 | 812 | 923 | - | - | |
Vifa1g05580 | 1127 | Gene3D | Ribonuclease Inhibitor | 38 | 236 | IPR032675 | - | |
Vifa1g05580 | 1127 | SUPERFAMILY | L domain-like | 353 | 464 | - | - | |
Vifa1g05580 | 1127 | SUPERFAMILY | L domain-like | 133 | 716 | - | - | |
Vifa1g05580 | 1127 | SMART | serkin_6 | 848 | 1126 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g05580 | 1127 | SUPERFAMILY | Protein kinase-like (PK-like) | 829 | 1119 | IPR011009 | - | |
Vifa1g05580 | 1127 | Pfam | Protein kinase domain | 851 | 1049 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g05580 | 1127 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 20 | 523 | - | - | |
Vifa1g05580 | 1127 | Gene3D | Phosphorylase Kinase; domain 1 | 812 | 923 | - | - | |
Vifa1g05580 | 1127 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 968 | 980 | IPR008271 | GO:0004672|GO:0006468 | |
Vifa1g05580 | 1127 | Gene3D | Ribonuclease Inhibitor | 346 | 468 | IPR032675 | - | |
Vifa1g05580 | 1127 | ProSiteProfiles | Protein kinase domain profile. | 848 | 1122 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g05580 | 1127 | FunFam | LRR receptor-like serine/threonine-protein kinase RPK2 | 350 | 527 | - | - | |
Vifa1g05580 | 1127 | SMART | LRR_typ_2 | 636 | 660 | IPR003591 | - | |
Vifa1g05580 | 1127 | SMART | LRR_typ_2 | 189 | 212 | IPR003591 | - | |
Vifa1g05580 | 1127 | SMART | LRR_typ_2 | 213 | 237 | IPR003591 | - | |
Vifa1g05580 | 1127 | SMART | LRR_typ_2 | 141 | 164 | IPR003591 | - | |
Vifa1g05580 | 1127 | SMART | LRR_typ_2 | 684 | 707 | IPR003591 | - | |
Vifa1g05580 | 1127 | SMART | LRR_typ_2 | 259 | 283 | IPR003591 | - | |
Vifa1g05580 | 1127 | SMART | LRR_typ_2 | 307 | 330 | IPR003591 | - | |
Vifa1g05580 | 1127 | SMART | LRR_typ_2 | 165 | 188 | IPR003591 | - | |
Vifa1g05580 | 1127 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 559 | 751 | - | - | |
Vifa1g05580 | 1127 | Gene3D | Ribonuclease Inhibitor | 237 | 343 | IPR032675 | - | |
Vifa1g05580 | 1127 | Gene3D | Ribonuclease Inhibitor | 469 | 795 | IPR032675 | - | |
Vifa1g05580 | 1127 | FunFam | LRR receptor-like serine/threonine-protein kinase RPK2 | 924 | 1126 | - | - | |
Vifa1g05580 | 1127 | CDD | STKc_IRAK | 854 | 1122 | - | - | |
Vifa1g05580 | 1127 | Pfam | Leucine rich repeat | 236 | 296 | IPR001611 | GO:0005515 | |
Vifa1g05580 | 1127 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 252 | 343 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g05580 | Vifa-Chr1 | 864907399 | 864910782 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g05580 | 39 | 1127 | Receptor kinase-like Gene Family | AT3G02130 | 62.757 | 0.0 | 1320 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XV | Vifa1g05580 | Pkinase | 3.2e-43 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g05580 | - | - | vum:124828178 | 1652.11 |