Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05573 ATGAAGGATCTGAAGTTCCTCTCTTTGGCTGGTAACAACTTGAGTGGCTCAATTCCTTCCAATCTGGGACAGTTGTACTCTTTACAAGTCTTGGACCTTTCTACAAACTCTTTTACTGGTGAGATTCCAAAGTTTATCGGGAAAATGAGAAATCTGACGCATGTGTTGCTCAATAACAACAACCTTTCTGGACACATTCCTGCTGGTTTGTCTAATGTCACTACACTCACTGCATTTAATGTGTCTTTCAATAATTTATCTGGATACTTGCCATCAAATAGTACCTTGATCAAATGCAACAGTGCTGTTGGAAATCCATTTCTAAGTTCCTGCCGCGGAGTTTCTCTAACTGTTCCATCAGCAAATCAACAAGGGCAGTTTGATGAAAATTCTTCTATTACATCACCAACTCCTGGCAAAAATAGTGATAATGGTTTCAATGCTATTGAGATAGCAGCAATAACTTCTGCTTCGGCCATTGTTTCTGTTCTTATAGCCCTAATTGTTCTGTTTTTCTTCACGCGAAAATGGAAGCCAAGATCCAGGGTTGGTGGTTCTGTCAAAAGAGAAGTTACCGTGTTTACTGATATCAGTGTGCCGTTGACATTTGAAAACGTTGTCCAAGCCACGGGAAATTTCAATGCAAGCAACTGTATTGGGAGTGGAGGATTTGGTGCAACTTACAAGGCAGAGATATCACAAGGAATCTTAGTGGCAGTGAAACGTCTTTCAGTTGGACGTTGCCAAGGTGTTCAACAATTTCATGCAGAGATTAAGACCCTTGGAAGGCTTCATCATCCAAACCTTGTCACTCTTATTGGTTACCATGCTTCTGAAACTGAGATGTTTTTGATATACAATTATCTTTCAGGCGGTAATCTTGAAAAGTTCATCCAGGAGAGATCCACAAGGGCTGTAGATTGGAAAATTCTGCACAAGATTGCATTGGACATAGCGCGTGCACTTTCCTATCTCCACGATCAATGCGTACCTCGTGTTCTTCATCGTGATGTCAAGCCTAGCAATATCTTGTTGGACGATAGTTTCAACGCCTATCTATCCGACTTTGGACTAGCAAGACTTCTAGGAACTTCAGAGACACATGCTACAACAGGTGTGGCAGGAACGTTTGGTTACGTTGCTCCTGAATACGCTATGACATGTCGTGTTTCCGATAAAGCCGACGTGTATAGCTATGGTGTGGTGCTTCTTGAGTTGCTCTCAGATAAGAAATTATTGGACCCTTCATTTTCTTCTTATGGAAATGGTTTCAATATAGTAGCATGGGGATGCATGCTTCTGAGTCAAGGAAGAGCGAAGGAGTTTTTCGCAGCAGGGTTATGGGACGCGGGACCAGAAAAAGATTTGGTAGAGGTTCTACACCTAGCTGTTGTTTGTACTGTTGATTCATTATCAACTAGACCTACAATGAAACAGGTTGTGAAAAGGTTAAAGCAACTTCAACCTCCATCATGCTAG 1479 0.4165 MKDLKFLSLAGNNLSGSIPSNLGQLYSLQVLDLSTNSFTGEIPKFIGKMRNLTHVLLNNNNLSGHIPAGLSNVTTLTAFNVSFNNLSGYLPSNSTLIKCNSAVGNPFLSSCRGVSLTVPSANQQGQFDENSSITSPTPGKNSDNGFNAIEIAAITSASAIVSVLIALIVLFFFTRKWKPRSRVGGSVKREVTVFTDISVPLTFENVVQATGNFNASNCIGSGGFGATYKAEISQGILVAVKRLSVGRCQGVQQFHAEIKTLGRLHHPNLVTLIGYHASETEMFLIYNYLSGGNLEKFIQERSTRAVDWKILHKIALDIARALSYLHDQCVPRVLHRDVKPSNILLDDSFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKLLDPSFSSYGNGFNIVAWGCMLLSQGRAKEFFAAGLWDAGPEKDLVEVLHLAVVCTVDSLSTRPTMKQVVKRLKQLQPPSC 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05573 492 SUPERFAMILY L domain-like 2 101 - -
Vifa1g05573 492 ProSitePatterns Protein kinases ATP-binding region signature. 219 241 IPR017441 GO:0005524
Vifa1g05573 492 Gene3D Transferase(Phosphotransferase) domain 1 289 489 - -
Vifa1g05573 492 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 3 487 - -
Vifa1g05573 492 Gene3D Ribonuclease Inhibitor 1 113 IPR032675 -
Vifa1g05573 492 FunFam Piriformospora indica-insensitive protein 2 1 92 - -
Vifa1g05573 492 SUPERFAMILY Protein kinase-like (PK-like) 194 484 IPR011009 -
Vifa1g05573 492 Pfam Protein kinase domain 216 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05573 492 SMART serkin_6 213 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05573 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 333 345 IPR008271 GO:0004672|GO:0006468
Vifa1g05573 492 CDD STKc_IRAK 219 487 - -
Vifa1g05573 492 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 289 491 - -
Vifa1g05573 492 ProSiteProfiles Protein kinase domain profile. 213 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05573 492 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 177 288 - -
Vifa1g05573 492 Gene3D Phosphorylase Kinase; domain 1 176 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05573 Vifa-Chr1 864234638 864236116 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05573 14 93 Receptor kinase-like Gene Family AT3G02130 37.500 2.52e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vifa1g05573 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05573 - - gmx:100819882 793.497