Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05570 ATGATTGAAATTCCATTAAAACAAGAAGTTCTTCCATCAAAGGATTCAACAAACTCATCATCATCAACAACATCACCATGGTTAAAGCTAAAGGATCCAAGAATTGTGAGAGTGTCAAGAGCCTTTGGAACAAAAGATAGACATAGCAAAGTATATACAATAAAAGGGCTAAGAGATAGAAGGGTAAGACTTTCAATTCAAACAGCAATTCATCTTTACGATCTTCAAGAAAGATTAGGGTTAAGTCAACCTAGCAAAGTTGTTGATTGGTTGCTTAATATAGCTAAGGATGAAATTGATGAGCTTCCACCACTTCCAACACCTCAAGGAAATTTCACCCTAGGCTATCCATCTTTTGTTAGTACTATTTCTAATGAATATGTTGGTCAAAAGAGTACTTCTATTTGGAAATCAAATTCAAGACAAGGGTTAGGAGAAATTGTTCCTAACAAAGAAAATTGGATAGATAGAAGCGAAAATGAGAGAGAAAAAAAACTAAAGACTGATAATTATGATTGCGTGCAATATATTTTGCCAAATAATATCTCGTCAGATTTTGCGTCTGAGTGTATCTCAAATATGGTTTCTTCTAACGGAGGAAATCTATCAGAAATTTCTCAAAGAAATAATCTTTTACAAAGGGCAAATCAACCTTCTTTCTTAGAATTGTTGAATACCATGCCACTTGGTTACCAATTGGAGCCTTCATCTAATCATGTTCCTCATGAGTTATCAAATTTTGGATTTGTTAACCAAATTAAAGATACAGATGAAGTTAATGTTGTACCTTTTCTATCATCATCATCATCATCATTATTTTCTTTGTCTACACAACAATATTTACCTTCACATGTTGGCGCAATGGAGGTGATGGAAACAAGACAAATCAATTACAACTATGAACAAATGATGAGTTCAAGTTTTCTCAATGCAACTCAACTATGA 945 0.3323 MIEIPLKQEVLPSKDSTNSSSSTTSPWLKLKDPRIVRVSRAFGTKDRHSKVYTIKGLRDRRVRLSIQTAIHLYDLQERLGLSQPSKVVDWLLNIAKDEIDELPPLPTPQGNFTLGYPSFVSTISNEYVGQKSTSIWKSNSRQGLGEIVPNKENWIDRSENEREKKLKTDNYDCVQYILPNNISSDFASECISNMVSSNGGNLSEISQRNNLLQRANQPSFLELLNTMPLGYQLEPSSNHVPHELSNFGFVNQIKDTDEVNVVPFLSSSSSSLFSLSTQQYLPSHVGAMEVMETRQINYNYEQMMSSSFLNATQL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05570 314 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 277 IPR005333 GO:0003700
Vifa1g05570 314 ProSiteProfiles TCP domain profile. 44 102 IPR017887 -
Vifa1g05570 314 Pfam TCP family transcription factor 43 150 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05570 Vifa-Chr1 863098950 863099894 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05570 27 182 TCP Transcription Factor Family AT3G02150 52.147 2.47e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa1g05570 TCP 2.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05570 - - psat:127121245 492.271