Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05569 ATGTCTAGAAAGAGTTTGAAATCAATGAAGAATGAAAATCAAGAACTGCAGAAACAAATTGGATGTATTAGTGGATTTTTTCATATGTTTGACCGTCACAGATTCCTCACAGGCCAGAGCAACAGTCACAACAATATACCAACTCAAGGAGGAACAAGTAATAACATCAAAGAGCTGAATAATGCAACACAAAAGGCAAAGAATGTGAAGGTTGCAAGAGAGATTCAACAATCCTCGACAGAATCGTCGTCAGGAACATCGATGTTTTCGTCGTCTTGTTCATCTAGCATGTCATCTCTCGAGTTTAATCGAACAGTACAGATAGAACCTCCACCGTCGGTAACTCAAATGAAAATCAACGAAAACTCGAGTTCAGAAGGAGCATTGGAGCAATGTGAGTACGAAAGACGGGAGTCGCTTGATTTCCACGATATTGTCAAAGACTCCATGCGTATACATTCACCAAGGTTATCAGTGAAAACTCTGGTTAAACAGGAAAAGAAGAGTCGAATACTGAAAAACGTCGACTCTCCGCGGCCTATGACTGCTTGGGATTCGCCGAGACTCTCTTATGATGGGAGAGATATACAAAGTACATTAAAATCTGCGACAAAGTTTAAGGAGCTTCCTAGGCTTTCCTTGGACAGCAAGGAAAGATCAATCAAAAGTTTCAATGAAGGAACGAAAACTCGGCTGCAGAAAGTGTGTGGAGCCTCCAACACAACTGGAAAGCAGATAGAAGAACCCGAAAGTGCGAAAAGACCATCGAGTGTTGTGGCAAAGTTGATGGGAATAGAAGCATTCCCCGACTGGAACGAGACTTGTGACAGCTGCAACACCAACAAAAACGAGATGTTTGTCGGGTCTAGGAAGGATGGATCGATCACGAATGTGACACCATATTCGCAATTTTCCAAGAGTAGTGAATCTTCAACAAAAGCATCAAACCGATCCCTCTCGGTTTACGGTGAAATTGAGAAAAGGATGGCAGATCTAGAGTTCAAAAAATCCGGAAAGGATCTTAGAGCTCTTAAACAGATTCTTGAAGCAATGCACAGATACAAAGAATCATTCGATACTACAAGTGATCAGGCTTCGAATTCTCCATACGACAATAGGAGTAATAGTAGTGTGAGTGAAAGCTTGAGTGTGAAAAGCCCGAGAACGCCGCAGAAGAACCCGACATTGATCACTGTTGAGAGGCCGAACTCAACTCAGACTAGTAAATCACCAATTGTCATCATGAAACCAGCAAAGGTTGCAAGAAAAACCAATTATTCTTCGTCAACAGAAAGTTCAATTCATGGTAAATCATCGAGTAGCAAGGTTTACCGCAGTGATGCTACCAATGTCAAAGATCCTCGAGATAAAAGCAACAAGATAACTTCAAAGTCGATCCAATCCTCAAAAGTTCCTCGAGTCGTCATTGCAGAAAACAACACCAGCTCCAGCATGATGGCAGAGACCAGAAGTCCAAGACTACAAAAAAAGTTCGGTTTGGAGAGACGTTCCCCGCCAACTAGCCCGTCATCAGATATCAGCAGTAACAGAAGACAACAAAATAAGCAATCGACGGAATTGTCTTCCCCGAGTAAAACATCTAGGCAAAAATTCTCTACTTTAAAGGAAAGAAATGAAAGTTTCAGTGAGATCAGCTATCAAAGGAGGGATTTTAAGCAAGTTGAAGCTGTTTCTAGCAGTGATACAAAAGACTCGAGCAATGAAAACTTTATGGCTGAAACAAAAGTTACTGCAGAACAACCTAGTCCTGTGTCTGTTCTCGATGCTTCATTTTATAGAGAAGATCCACCTTCTCCGGTAAAAAGGAAATCAGACATCTCAAAAGATTTAGAGGAAGTTTTGAACAATTGTGGTATTAGTGAAGAGGACTCAGAAGATCTTGCTCTTTCATCGAATATGAACACAAAAGTCAACTTCTGCGACAGAACCAATGACATTGACTTGATAACTTGTAATTTGGTTCAAGTTCTTCAACAAATTGACGACAGCGATGATGAAAGACTCAAGAATTTCAGCAACCACGAAGATCCAGACCACAAATATATATCAGAAATACTACTAGCATCGGGAAGGCTCACCAGTCCCGGCTCTAGCAAGGCATTGCATTTGTCGGGTCACCCGATCAACCCAACATTGTTTCTTGCACTAGAGAAAATCAAAACAAACACGAATTTCAACATTGCGCAGACAAACAACACTCAAGAGAAGATGCAAAGAAAGCTCGTATTTGACGTGGTAAACGAAATTCTATCTCGAAAGCTAATAATCGAGAGTTCTTACAAGCCATATCATCCCGAACAAAGAAAACCAGAAGGACAACACCTTTTGGACATGGTTTTCACAGAAATCGATAAATTACAGCGCAATAATAACAACGTCGATCTGGCTAATGAGGACGAGTATTTGACAAGTATTGTTTCGGAAGATTTGGTGCAGCATTCTGCAACTACAGAATGCTACAATGAGATACCAAATGTTGTGTTGGATATTGAAAGATTGATCTTCAAAGATCTGATAACTGAAGTTGTGAGAACTGAATAA 2562 0.4067 MSRKSLKSMKNENQELQKQIGCISGFFHMFDRHRFLTGQSNSHNNIPTQGGTSNNIKELNNATQKAKNVKVAREIQQSSTESSSGTSMFSSSCSSSMSSLEFNRTVQIEPPPSVTQMKINENSSSEGALEQCEYERRESLDFHDIVKDSMRIHSPRLSVKTLVKQEKKSRILKNVDSPRPMTAWDSPRLSYDGRDIQSTLKSATKFKELPRLSLDSKERSIKSFNEGTKTRLQKVCGASNTTGKQIEEPESAKRPSSVVAKLMGIEAFPDWNETCDSCNTNKNEMFVGSRKDGSITNVTPYSQFSKSSESSTKASNRSLSVYGEIEKRMADLEFKKSGKDLRALKQILEAMHRYKESFDTTSDQASNSPYDNRSNSSVSESLSVKSPRTPQKNPTLITVERPNSTQTSKSPIVIMKPAKVARKTNYSSSTESSIHGKSSSSKVYRSDATNVKDPRDKSNKITSKSIQSSKVPRVVIAENNTSSSMMAETRSPRLQKKFGLERRSPPTSPSSDISSNRRQQNKQSTELSSPSKTSRQKFSTLKERNESFSEISYQRRDFKQVEAVSSSDTKDSSNENFMAETKVTAEQPSPVSVLDASFYREDPPSPVKRKSDISKDLEEVLNNCGISEEDSEDLALSSNMNTKVNFCDRTNDIDLITCNLVQVLQQIDDSDDERLKNFSNHEDPDHKYISEILLASGRLTSPGSSKALHLSGHPINPTLFLALEKIKTNTNFNIAQTNNTQEKMQRKLVFDVVNEILSRKLIIESSYKPYHPEQRKPEGQHLLDMVFTEIDKLQRNNNNVDLANEDEYLTSIVSEDLVQHSATTECYNEIPNVVLDIERLIFKDLITEVVRTE 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05569 853 MobiDBLite consensus disorder prediction 358 546 - -
Vifa1g05569 853 MobiDBLite consensus disorder prediction 73 92 - -
Vifa1g05569 853 MobiDBLite consensus disorder prediction 504 536 - -
Vifa1g05569 853 PANTHER LONGIFOLIA PROTEIN 302 853 IPR033334 GO:0051513
Vifa1g05569 853 MobiDBLite consensus disorder prediction 360 412 - -
Vifa1g05569 853 MobiDBLite consensus disorder prediction 461 490 - -
Vifa1g05569 853 Pfam Domain of unknown function (DUF4378) 685 848 IPR025486 -
Vifa1g05569 853 MobiDBLite consensus disorder prediction 422 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05569 Vifa-Chr1 862589722 862593488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05569 141 853 TRM (TON1 Recruiting Motif) Superfamily AT5G15580 31.740 4.25e-70 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05569 - - psat:127121234 1338.94