Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05560 ATGATACCCATATCTCTTTACATCACAATGGAGTTGGTTAGGTTGGGCCAGTCATACTTCATGATTGAAGACATGGATATGTGTGACCCTAGCTCTGGATCAAGGTTTCAGTGCAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGTTATGTATTTTCAGACAAGACAGGAACGCTAACAGAAAACAAGATGGAATTCCGAAGGGCTAGTGTACATGGGAAGAATTATGGGAGCTCCTTGGTTACTACTGATGATAGTTCAGCAGCAACAGCTGTTATTCCGAAACGGAGATGGAAGCTCAAATCTGAAATTGCAGTTGATCCCCAACTAATGACCATGCTGCATAGAAACTCAAATAGAGATGAAAGAATAGCTGCTCATGAGTTTTTTCTTACATTGGCTGCTTGTAATACTGTGATTCCTATACTTACTGATGGTGGATTTTCTGGTTGTCGAATAAGTGAATCAAATGGATATGTAGAATGCATTGATTATCAGGGTGAATCCCCTGATGAACAAGCTCTAGTTTCTGCGGCCTCTGCATATGGATACACTCTTTTTGAGCGGACATCTGGACATATTGTTATTGACATCAACGGTGAGAAACTCAGGTTGGATGTGTTGGGCCTGCACGAATTTGACAGTGTGCGAAAGAGAATGTCCGTTGTTATTCGGTTTCCTGACAACGTGGTAAAGGTGCTTGTCAAAGGCGCTGATACATCAATGTTTATCATTTTGGGAAATGTCAGTGAGAGCAACAGTAGCTTATTGCATGCAACTCAGAGCCATCTGAGTGAATACTCATCACAAGGTTTGCGCACCCTTGTGGTTGCCTCTAGAAGTCTATCTGATGCTGAACTTGAGGAGTGGCAAAGCAGGTATGGAGAGGCTAGCACCGCGTTAACTAACAGAGCTACTAAACTACGTCAAACTGCAGCTCTTATAGAATGCAATTTAAATCTACTTGGAGCAACTGGAATTGAAGACAAGCTGCAAGAGGGTGTACCAGAAGCCATTGAGTCCCTACGACAAGCTGGAATCAAGGTCTGGGTTCTTACCGGTGATAAACAAGAGACGGCAATTTCATTTGGTCTTTCCTGCAAACTTCTCAGTGCAGATATGCAACAAATTGTTATAAACGGCACTTCAGAGGAGGAATGCAGAAATCTTTTGGGTGATGCAATAGCCAAATATGCTGTGAGATGTTCAAGTAGAGGGCACCAGAATCTGAAGCATAAAACCAATGCTGAACATGGCGCACTTGATATTCCTAATTGTTCAAAGTCAATGAGTTTGCCCAAATGGAATCTAGGAAAGGAAGAAGGAGCTGATACTCCATTGGCACTTGTAATTGATGGGAATAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTCTTTGACCTTGCAATTTCCTGTAAGGTTGTACTTTGTTGTCGTGTTGCACCCTTGCAGAAGGCTGGAATTGTTGATCTGATAAAGAGCCGCACAGATGATATGACACTGGCCATAGGTGACGGGGCCAATGATGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGACGTCAAGCAGTGATGGCATCAGATTTTGCTATGGGGCAATTTCAGTTCTTGAAAAGATTACTTCTTGTTCATGGACACTGGAATTACCAGCGTGTCGGTTAG 1698 0.424 MIPISLYITMELVRLGQSYFMIEDMDMCDPSSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRRASVHGKNYGSSLVTTDDSSAATAVIPKRRWKLKSEIAVDPQLMTMLHRNSNRDERIAAHEFFLTLAACNTVIPILTDGGFSGCRISESNGYVECIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDINGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNVVKVLVKGADTSMFIILGNVSESNSSLLHATQSHLSEYSSQGLRTLVVASRSLSDAELEEWQSRYGEASTALTNRATKLRQTAALIECNLNLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISFGLSCKLLSADMQQIVINGTSEEECRNLLGDAIAKYAVRCSSRGHQNLKHKTNAEHGALDIPNCSKSMSLPKWNLGKEEGADTPLALVIDGNSLVYILEKELESELFDLAISCKVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKRLLLVHGHWNYQRVG 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05560 565 Gene3D - 64 82 IPR023299 GO:0000166
Vifa1g05560 565 Gene3D - 51 63 IPR023214 -
Vifa1g05560 565 NCBIfam phospholipid-translocating P-type ATPase 1 564 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa1g05560 565 PRINTS P-type cation-transporting ATPase superfamily signature 54 68 - -
Vifa1g05560 565 PRINTS P-type cation-transporting ATPase superfamily signature 508 527 - -
Vifa1g05560 565 Pfam haloacid dehalogenase-like hydrolase 279 363 - -
Vifa1g05560 565 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 564 - -
Vifa1g05560 565 SFLD Haloacid Dehalogenase 38 559 - -
Vifa1g05560 565 SUPERFAMILY HAD-like 49 554 IPR036412 -
Vifa1g05560 565 FunFam Phospholipid-transporting ATPase 166 301 - -
Vifa1g05560 565 Pfam Cation transport ATPase (P-type) 171 244 - -
Vifa1g05560 565 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 60 337 IPR023299 GO:0000166
Vifa1g05560 565 Gene3D - 163 298 IPR023299 GO:0000166
Vifa1g05560 565 Gene3D - 320 548 IPR023214 -
Vifa1g05560 565 Pfam Phospholipid-translocating P-type ATPase C-terminal 536 564 IPR032630 -
Vifa1g05560 565 ProSitePatterns E1-E2 ATPases phosphorylation site. 56 62 IPR018303 -
Vifa1g05560 565 Gene3D - 37 50 - -
Vifa1g05560 565 NCBIfam HAD-IC family P-type ATPase 474 564 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g05560 565 SFLD p-type atpase 38 559 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05560 Vifa-Chr1 861594998 861596695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05560 1 565 Primary Pumps ATPases AT5G04930 56.460 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05560 K14802 - gmx:100789830 939.873