Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05541 ATGATTCAACCATTAGCCATCCAATCATCCATCCAACAATCAAATGATGTTCTACTAATAGGCGTGTGGGGCATGGGAGGAACGGGCAAAACTACTATTGCAAAAGTCATTTATAATAAAATTGGCCGCAATTTTGAAGGTAGGAGCTTCCTTGCAAATATTAGAGAAGTTTGGGAACAAAATGTTGGCCAAGTGTCTTTACAAGAACAAATTCTCTTCGATATCTGTAAAGAAACTAAAGCAGGGATACAAAACATTGACAAAGGAAAAAGTATATTAAAGGATAAGCTTGGCCATAAAAGAGTACTCCTCGTACTTGATGATGTGAATACATTGAATCAATTGAATGCTTTGTGTGGAGGTAGGCAATGGTTTGGTTCGGGTAGTAGAATAATTATCACAACTAGAAATATGGATTTACTTAAAGGGAATAGAGTTGATAAACTTTACAAAATGCAAGAAATGAATGAAAGAGAATCAATTGAGCTTTTCAGTTGGCACACATTCAAGCAAGTGAAACCGAAAGAAGTTTTCATTGAAATTTCCAAAAATGTTGTTGAGTATTGTGGGAGATTGCCACTAGCTCTAGAAGTCCTTGGGTCCTATTTGTATGGTAGGGAGGTAAAAGAGTGGGAGTATGTCTTGGACAAACTCAAAACAATCCCCAATGATCAAATTCATAAGAAGTTAAAAATAACATCAGATGGCATTAAAAATTTGTTGTTGATAAATTACACAAAGGCCACCATTATGCTTTTTAAGACAGAGGCATTAGCATCTTTTGAAGATGAGGATTTGCAGAGTGCGATATCAAGTATACAATCTGGTAATAAAGTGGAGTTTGTTGTTGTTTCTGAGAACTATTTCATTGTGAAGAATACAAGAATTTATCTAATATATGATCGACCAATTCACAGAGAATTTGGTTTCATTAATTTTGAAGAGGAAGAATCTTGTTTCAATGACATAGAATCCAGATCTAGTGAGGAGGTTGTAAAAGTAGCGACTGCAAGAAAAATCAGCGGCCAAACAAAAATCTGCTTACAGAATGAGCAGTTCCTTTGA 1065 0.3521 MIQPLAIQSSIQQSNDVLLIGVWGMGGTGKTTIAKVIYNKIGRNFEGRSFLANIREVWEQNVGQVSLQEQILFDICKETKAGIQNIDKGKSILKDKLGHKRVLLVLDDVNTLNQLNALCGGRQWFGSGSRIIITTRNMDLLKGNRVDKLYKMQEMNERESIELFSWHTFKQVKPKEVFIEISKNVVEYCGRLPLALEVLGSYLYGREVKEWEYVLDKLKTIPNDQIHKKLKITSDGIKNLLLINYTKATIMLFKTEALASFEDEDLQSAISSIQSGNKVEFVVVSENYFIVKNTRIYLIYDRPIHREFGFINFEEEESCFNDIESRSSEEVVKVATARKISGQTKICLQNEQFL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05541 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 238 IPR027417 -
Vifa1g05541 354 Gene3D - 154 247 IPR042197 -
Vifa1g05541 354 PRINTS Disease resistance protein signature 19 34 - -
Vifa1g05541 354 PRINTS Disease resistance protein signature 189 203 - -
Vifa1g05541 354 PRINTS Disease resistance protein signature 96 110 - -
Vifa1g05541 354 Gene3D - 5 149 IPR027417 -
Vifa1g05541 354 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 239 IPR044974 GO:0006952
Vifa1g05541 354 Pfam NB-ARC domain 13 242 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05541 Vifa-Chr1 859062514 859063578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05541 12 242 WRKY Transcription Factor Family AT5G45050 32.627 5.89e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05541 - - cam:101494533 346.28