Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05535 ATGTCTTCTGTAACATACCCAGTTCTCATAACACTTCAAAAACCTCAAATTTCTTCACTTTTTTTGTCACCCAAAAGAGTTTCAACTTCAACCAGTTATGCCTTGTTGAAGTCTCCAACACTTCAATTTGAGGCTAAAGATTCAACCTTGGTGAAGGCCTTGGGAGTAAGACAAAGAAGGTTTAAAGTTGTTGTTGCAGCATTAGCAGCTGATGCTGATGATAGTGAAATTGAAATTTCAAATGGGTCAGTCATATCCTCAAAGAGTTTTGGTGAGAAATTTCCTGCATTGGTTACTGGTTTCTTTTTCTTTATGTGGTACTTCTTAAATGTGATTTTCAACATACTCAACAAGAAAGTCTACAATTATTTTCCATATCCATTTTTTGTTTCTGTTGTACATCTCCTTGTTGGGGTGGTATATTGCCTTGTTTCTTGGGGTCTAGCTCTACCGAGACGCGCACCAATGAATAAGGAGCTCTTGTTACTATTGACTCCAGTTGCATTTTGTCATGCCCTTGGTCATGTTATGTCCAATGTATCATTTGCTGCTGTTGCTGTATCTTTCACACATACCATAAAAGCTCTGGAGCCATTTTTCAACGCTTCAGCTTCCCAGTTTGTTTTAGGCCAACATATTCCCTTATCTCTATGGCTATCTCTGGCCCCTGTTGTTTTTGGTGTATCAATGGCGTCACTAACTGAACTGTCTTTCAATTGGACTGGTTTCATTAGCGCAATGATTTCAAATATTGCGTTTACATACAGAAGTTTATATTCTAAGAAAGCAATGACGGGAATGGACAGTACGAATGTGTATGCCTATATTTCAGTAATTGCGCTCGCCTTTTGTATCCCTCCGGCAATACTTATTGAGGGACCCCAACTCATGGAATTTGGATTTAGAAATGCTATAGCCAAAGTAGGACTGATCAAGTTTTTGTCTGATCTTTTCTGGATTGGGATGTTTTACCATCTTTATAATCAGCTTGCTACTAATACTTTGGAGCGCGTTGCGCCACTGACACATGCAGTTGGAAATGTGCTGAAGAGAGTTTTTGTCATTGGATTTTCAATAGTGGTGTTTGGCAACAAGATATCTACACAAACTGGCATTGGAACTGCAATTGCAATTGCAGGTGTTGCCATCTATTCTCTGATAAAAGCAAACATGGAAGAACAAAAACGGAAAGCTGCGCCTGCTACAACCCCTGCATCGTAA 1221 0.3931 MSSVTYPVLITLQKPQISSLFLSPKRVSTSTSYALLKSPTLQFEAKDSTLVKALGVRQRRFKVVVAALAADADDSEIEISNGSVISSKSFGEKFPALVTGFFFFMWYFLNVIFNILNKKVYNYFPYPFFVSVVHLLVGVVYCLVSWGLALPRRAPMNKELLLLLTPVAFCHALGHVMSNVSFAAVAVSFTHTIKALEPFFNASASQFVLGQHIPLSLWLSLAPVVFGVSMASLTELSFNWTGFISAMISNIAFTYRSLYSKKAMTGMDSTNVYAYISVIALAFCIPPAILIEGPQLMEFGFRNAIAKVGLIKFLSDLFWIGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTAIAIAGVAIYSLIKANMEEQKRKAAPATTPAS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05535 406 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 97 395 IPR004696 GO:0016020|GO:0022857|GO:0055085
Vifa1g05535 406 Pfam Triose-phosphate Transporter family 98 385 IPR004853 -
Vifa1g05535 406 PANTHER SOLUTE CARRIER FAMILY 35 100 392 - -
Vifa1g05535 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 142 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05535 Vifa-Chr1 858969247 858971753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05535 47 396 Antiporters AT5G46110 74.286 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05535 K15283 - pvy:116132902 581.252