Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05527 ATGTCTTTTTCAAAGCCCAGATCTAAAGTGCCGCCTCTAACCAGACGCGAACTGGTTAAAACACAAATAGCAAAAAGCATCACGGATTCTGTCAAAAGAAGCACAGAAGCAAGTGATATAAGAAGCTATGAAGTGTTCTTAAGTTTTCGGGGAGAAGACACTCGTGCATCTTTTACCTCACATCTCCATGCTTCACTTCAGAACGACGGAATCTCGGTTTTTATGGACGATGATTCGCTTCAGAGAGGAGATCATATTTCAACATCACTGGTGAAAGCAATAGAAGATTCTCGAGTGTCTGTGATTGTTTTTTCAACAAATTATGCAGATTCGCGTTGGTGTTTGGATGAGTTGGTGAAGATAATGGAGTGTCGCAGAACCATAGGTCAGGTGGTGCTTCCTGTGTTCTATGGCGTAGATCCATCTGAAGTTCGTCATCAAACTGGTCAGTTTGGACAAGCATTTCAAACTCTGTTGAACAGAATGAATCAGGAAGACTCTTTATCGCAGAAATGGAGAGATGCACTTCTTGAAGCTGCTGGTCTTGCTGGCTTCGTAGTTCTAAATTCAAGGAATGAAAGGGAGGCTATCAATCATATTGTTGAAAAAATTACTCTTTTGCTTGATAAGACAGACTTGTTTGTCGCTGATAATCCAGTGGGAGTTGAATCCCGAGTGCAAGATACGACTCAACAACTAGGCATCGAACAATCAAATAATGTTCTACTCCTAGGGATGTGGGGTATGGGGGGAACCGGTAAAACAACCATTGCAAAAGCCATTTACAACAAAATTGGCCGCAATTTCGAAGAAATCGGAATAAGTGTGCTTGTTGAGCGAAGCCTAGTAACTGTTGATGATAAAAACAAACTTGGAATGCATGATTTGTTACGAGATATGGGAAGAGAAATCATTCGTGAAAAATCACCAAAAGAGCCTGAGGAACGTAGTAGGTTATGGTTTCATGAGGACGTGCTTGATGTTTTATCTGATCGGAGTGGAACAAAAGCTGTTGAGGGATTGGCTTTGAAGTTGCCAATAGCTAGTTCAAAATGTTTTAGTACTAAAGCATTTAAGAAAATGAAGAGACTCAGATTGCTTCAACTTGTTGGAATAAGACTTGATGGCGATTTCGAATATCTTTCAAGAAATTTAAGGTGGTTATGTTGGAATGGATTTCCTTTAACATGCATACCTTCAGATTTTTATCAACGAAATATAGTTTCTATGGAGTTAGAAAACAGCAATATGAGAGTTGTGTGGAAAGAAACCCAGAGAATGGAGATGCTGAAAATCCTAAACCTTAGTCATTCTCATCATCTGATGCAGACCCCAGACTTCTCAAATTTGCCTAATCTTGAAAAGCTAATACTTGTAGATTGTCCAATGTTATCTGAGGTTTCCAACAGCATTGGAGAACTCAATAAAATTCTTTCAATAAATTTGGAAGACTGTATTAACCTATGTAACCTTCCAAGAAGCATTTATAAGTTGACATCTCTTAAAACTCTAATTCTCTCAGGGTGTTTAATGATTGACACGTTGGAAGAGGACATAGAACAAATGGAATCTTTAACCACTCTGATTGCAAATAACACTGGAATAACAAGGGTTCCGTTTTCTGTAGTGAGATCAAAAAGCATTGGCTATATTTCCTTGTGCGGCTATGAAGGATTCTCACGAGATGTGTTTCCATCTATCATTTGGTCTTGGATGTCTCCAACAAATAACTTTCCATCCCAATTTCAAACCTCTACTATCATGTCATCTCTTGTTCCTCTTGATGTGCCACATAGTAGTTCCCAGGAGCTATCATCGATTTCCAAGTATCTTCCAAATCTTAGAAGTCTTTGGGTGGAGTGCAGCTCGGAAGATCAACTTTCTCTTGATACAACAATAATTTTGGAGGCATTGTGCACCACAAATTCTAAAGAATTGGAACCAACAACAACTACATCACAAGTATCAAAAATTTCCTTGAAATCTCTTTTCATTCAATTGGGAATGAATTGCCAAGTTGCCAATATTTTGAAAGAGAAAATTTTACAGAATACGACTGTTGATGAGAGTGGTGGTTGTGTGCTCCTGGGTGATAGTTACCCCGATTGGTTAAGTTTTAATTGTGATGGTTCTTCTGTAATTTTTGAAGTTCCTCAAGTAGAAGGGCATAATTTGAAGTCATTGATGTGCATTGCCTATTCTTCAACTCCGGATAACATAACATCGGATGGACTTATAAGTGTGTTAGTGAAAAATTACACAAAGGCCACCATTCAGCTCTATAAGAGAGAGACATTAGCTTCCTTTAAGGATGAGGAGGGGGAGAGACTAGTATCAAGTATAGAACCCGGAGACAGAGTGGAAGTTGTTGTTGTTTTTGAGAGTGGTTTCATTGTGAAGAAAACAACCATTTATCTCATTTATGATTAG 2430 0.3856 MSFSKPRSKVPPLTRRELVKTQIAKSITDSVKRSTEASDIRSYEVFLSFRGEDTRASFTSHLHASLQNDGISVFMDDDSLQRGDHISTSLVKAIEDSRVSVIVFSTNYADSRWCLDELVKIMECRRTIGQVVLPVFYGVDPSEVRHQTGQFGQAFQTLLNRMNQEDSLSQKWRDALLEAAGLAGFVVLNSRNEREAINHIVEKITLLLDKTDLFVADNPVGVESRVQDTTQQLGIEQSNNVLLLGMWGMGGTGKTTIAKAIYNKIGRNFEEIGISVLVERSLVTVDDKNKLGMHDLLRDMGREIIREKSPKEPEERSRLWFHEDVLDVLSDRSGTKAVEGLALKLPIASSKCFSTKAFKKMKRLRLLQLVGIRLDGDFEYLSRNLRWLCWNGFPLTCIPSDFYQRNIVSMELENSNMRVVWKETQRMEMLKILNLSHSHHLMQTPDFSNLPNLEKLILVDCPMLSEVSNSIGELNKILSINLEDCINLCNLPRSIYKLTSLKTLILSGCLMIDTLEEDIEQMESLTTLIANNTGITRVPFSVVRSKSIGYISLCGYEGFSRDVFPSIIWSWMSPTNNFPSQFQTSTIMSSLVPLDVPHSSSQELSSISKYLPNLRSLWVECSSEDQLSLDTTIILEALCTTNSKELEPTTTTSQVSKISLKSLFIQLGMNCQVANILKEKILQNTTVDESGGCVLLGDSYPDWLSFNCDGSSVIFEVPQVEGHNLKSLMCIAYSSTPDNITSDGLISVLVKNYTKATIQLYKRETLASFKDEEGERLVSSIEPGDRVEVVVVFESGFIVKKTTIYLIYD 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05527 809 ProSiteProfiles TIR domain profile. 41 208 IPR000157 GO:0007165
Vifa1g05527 809 SUPERFAMILY "Winged helix" DNA-binding domain 259 329 IPR036390 -
Vifa1g05527 809 SUPERFAMILY Toll/Interleukin receptor TIR domain 38 184 IPR035897 -
Vifa1g05527 809 Gene3D - 37 213 IPR035897 -
Vifa1g05527 809 PRINTS Disease resistance protein signature 496 512 - -
Vifa1g05527 809 PRINTS Disease resistance protein signature 243 258 - -
Vifa1g05527 809 Pfam NB-ARC domain 225 304 IPR002182 GO:0043531
Vifa1g05527 809 SUPERFAMILY L domain-like 343 666 - -
Vifa1g05527 809 Pfam TIR domain 43 207 IPR000157 GO:0007165
Vifa1g05527 809 Gene3D - 214 343 IPR027417 -
Vifa1g05527 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 271 IPR027417 -
Vifa1g05527 809 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 43 270 IPR044974 GO:0006952
Vifa1g05527 809 SMART till_3 42 182 IPR000157 GO:0007165
Vifa1g05527 809 Gene3D Ribonuclease Inhibitor 344 651 IPR032675 -
Vifa1g05527 809 FunFam Disease resistance protein (TIR-NBS-LRR class) 39 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05527 Vifa-Chr1 857743741 857747867 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05527 271 542 WRKY Transcription Factor Family AT4G12020 32.639 1.17e-30 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05527 - - tpra:123910008 877.856