LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g05527	ATGTCTTTTTCAAAGCCCAGATCTAAAGTGCCGCCTCTAACCAGACGCGAACTGGTTAAAACACAAATAGCAAAAAGCATCACGGATTCTGTCAAAAGAAGCACAGAAGCAAGTGATATAAGAAGCTATGAAGTGTTCTTAAGTTTTCGGGGAGAAGACACTCGTGCATCTTTTACCTCACATCTCCATGCTTCACTTCAGAACGACGGAATCTCGGTTTTTATGGACGATGATTCGCTTCAGAGAGGAGATCATATTTCAACATCACTGGTGAAAGCAATAGAAGATTCTCGAGTGTCTGTGATTGTTTTTTCAACAAATTATGCAGATTCGCGTTGGTGTTTGGATGAGTTGGTGAAGATAATGGAGTGTCGCAGAACCATAGGTCAGGTGGTGCTTCCTGTGTTCTATGGCGTAGATCCATCTGAAGTTCGTCATCAAACTGGTCAGTTTGGACAAGCATTTCAAACTCTGTTGAACAGAATGAATCAGGAAGACTCTTTATCGCAGAAATGGAGAGATGCACTTCTTGAAGCTGCTGGTCTTGCTGGCTTCGTAGTTCTAAATTCAAGGAATGAAAGGGAGGCTATCAATCATATTGTTGAAAAAATTACTCTTTTGCTTGATAAGACAGACTTGTTTGTCGCTGATAATCCAGTGGGAGTTGAATCCCGAGTGCAAGATACGACTCAACAACTAGGCATCGAACAATCAAATAATGTTCTACTCCTAGGGATGTGGGGTATGGGGGGAACCGGTAAAACAACCATTGCAAAAGCCATTTACAACAAAATTGGCCGCAATTTCGAAGAAATCGGAATAAGTGTGCTTGTTGAGCGAAGCCTAGTAACTGTTGATGATAAAAACAAACTTGGAATGCATGATTTGTTACGAGATATGGGAAGAGAAATCATTCGTGAAAAATCACCAAAAGAGCCTGAGGAACGTAGTAGGTTATGGTTTCATGAGGACGTGCTTGATGTTTTATCTGATCGGAGTGGAACAAAAGCTGTTGAGGGATTGGCTTTGAAGTTGCCAATAGCTAGTTCAAAATGTTTTAGTACTAAAGCATTTAAGAAAATGAAGAGACTCAGATTGCTTCAACTTGTTGGAATAAGACTTGATGGCGATTTCGAATATCTTTCAAGAAATTTAAGGTGGTTATGTTGGAATGGATTTCCTTTAACATGCATACCTTCAGATTTTTATCAACGAAATATAGTTTCTATGGAGTTAGAAAACAGCAATATGAGAGTTGTGTGGAAAGAAACCCAGAGAATGGAGATGCTGAAAATCCTAAACCTTAGTCATTCTCATCATCTGATGCAGACCCCAGACTTCTCAAATTTGCCTAATCTTGAAAAGCTAATACTTGTAGATTGTCCAATGTTATCTGAGGTTTCCAACAGCATTGGAGAACTCAATAAAATTCTTTCAATAAATTTGGAAGACTGTATTAACCTATGTAACCTTCCAAGAAGCATTTATAAGTTGACATCTCTTAAAACTCTAATTCTCTCAGGGTGTTTAATGATTGACACGTTGGAAGAGGACATAGAACAAATGGAATCTTTAACCACTCTGATTGCAAATAACACTGGAATAACAAGGGTTCCGTTTTCTGTAGTGAGATCAAAAAGCATTGGCTATATTTCCTTGTGCGGCTATGAAGGATTCTCACGAGATGTGTTTCCATCTATCATTTGGTCTTGGATGTCTCCAACAAATAACTTTCCATCCCAATTTCAAACCTCTACTATCATGTCATCTCTTGTTCCTCTTGATGTGCCACATAGTAGTTCCCAGGAGCTATCATCGATTTCCAAGTATCTTCCAAATCTTAGAAGTCTTTGGGTGGAGTGCAGCTCGGAAGATCAACTTTCTCTTGATACAACAATAATTTTGGAGGCATTGTGCACCACAAATTCTAAAGAATTGGAACCAACAACAACTACATCACAAGTATCAAAAATTTCCTTGAAATCTCTTTTCATTCAATTGGGAATGAATTGCCAAGTTGCCAATATTTTGAAAGAGAAAATTTTACAGAATACGACTGTTGATGAGAGTGGTGGTTGTGTGCTCCTGGGTGATAGTTACCCCGATTGGTTAAGTTTTAATTGTGATGGTTCTTCTGTAATTTTTGAAGTTCCTCAAGTAGAAGGGCATAATTTGAAGTCATTGATGTGCATTGCCTATTCTTCAACTCCGGATAACATAACATCGGATGGACTTATAAGTGTGTTAGTGAAAAATTACACAAAGGCCACCATTCAGCTCTATAAGAGAGAGACATTAGCTTCCTTTAAGGATGAGGAGGGGGAGAGACTAGTATCAAGTATAGAACCCGGAGACAGAGTGGAAGTTGTTGTTGTTTTTGAGAGTGGTTTCATTGTGAAGAAAACAACCATTTATCTCATTTATGATTAG	2430	0.3856	MSFSKPRSKVPPLTRRELVKTQIAKSITDSVKRSTEASDIRSYEVFLSFRGEDTRASFTSHLHASLQNDGISVFMDDDSLQRGDHISTSLVKAIEDSRVSVIVFSTNYADSRWCLDELVKIMECRRTIGQVVLPVFYGVDPSEVRHQTGQFGQAFQTLLNRMNQEDSLSQKWRDALLEAAGLAGFVVLNSRNEREAINHIVEKITLLLDKTDLFVADNPVGVESRVQDTTQQLGIEQSNNVLLLGMWGMGGTGKTTIAKAIYNKIGRNFEEIGISVLVERSLVTVDDKNKLGMHDLLRDMGREIIREKSPKEPEERSRLWFHEDVLDVLSDRSGTKAVEGLALKLPIASSKCFSTKAFKKMKRLRLLQLVGIRLDGDFEYLSRNLRWLCWNGFPLTCIPSDFYQRNIVSMELENSNMRVVWKETQRMEMLKILNLSHSHHLMQTPDFSNLPNLEKLILVDCPMLSEVSNSIGELNKILSINLEDCINLCNLPRSIYKLTSLKTLILSGCLMIDTLEEDIEQMESLTTLIANNTGITRVPFSVVRSKSIGYISLCGYEGFSRDVFPSIIWSWMSPTNNFPSQFQTSTIMSSLVPLDVPHSSSQELSSISKYLPNLRSLWVECSSEDQLSLDTTIILEALCTTNSKELEPTTTTSQVSKISLKSLFIQLGMNCQVANILKEKILQNTTVDESGGCVLLGDSYPDWLSFNCDGSSVIFEVPQVEGHNLKSLMCIAYSSTPDNITSDGLISVLVKNYTKATIQLYKRETLASFKDEEGERLVSSIEPGDRVEVVVVFESGFIVKKTTIYLIYD	809

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g05527	809	ProSiteProfiles	TIR domain profile.	41	208	IPR000157	GO:0007165
	Vifa1g05527	809	SUPERFAMILY	"Winged helix" DNA-binding domain	259	329	IPR036390	-
	Vifa1g05527	809	SUPERFAMILY	Toll/Interleukin receptor TIR domain	38	184	IPR035897	-
	Vifa1g05527	809	Gene3D	-	37	213	IPR035897	-
	Vifa1g05527	809	PRINTS	Disease resistance protein signature	496	512	-	-
	Vifa1g05527	809	PRINTS	Disease resistance protein signature	243	258	-	-
	Vifa1g05527	809	Pfam	NB-ARC domain	225	304	IPR002182	GO:0043531
	Vifa1g05527	809	SUPERFAMILY	L domain-like	343	666	-	-
	Vifa1g05527	809	Pfam	TIR domain	43	207	IPR000157	GO:0007165
	Vifa1g05527	809	Gene3D	-	214	343	IPR027417	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g05527	Vifa-Chr1	857743741	857747867	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g05527	271	542	WRKY Transcription Factor Family	AT4G12020	32.639	1.17e-30	128

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g05527	-		-	tpra:123910008	877.856

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