LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g05526	ATGTCTTTTTCAAAGCCCAGATCTAAAGTGCCGCCTCTAACCAGACGCGAACTGGTTAAAACACAAATAGCAAAAAGCATCACGGATTCTGTCAAAAGAAGCACAGAAGCAAGTGATATAAGAAGCTATGAAGTGTTCTTAAGTTTTCGGGGAGAAGACACTCGTGCATCTTTTACCTCACATCTCCATGCTTCACTTCAGAACGACGGAATCTCGGTTTTTATGGACGATGATTCGCTTCAGAGAGGAGATCATATTTCAACATCACTGGTGAAAGCAATAGAAGATTCTCGAGTGTCTGTGATTGTTTTTTCAACAAATTATGCAGATTCGCGTTGGTGTTTGGATGAGTTGGTGAAGATAATGGAGTGTCGCAGAACCATAGGTCAGGTGGTGCTTCCTGTGTTCTATGGCGTAGATCCATCTGAAGTTCGTCATCAAACTGGTCAGTTTGGACAAGCATTTCAAACTCTGTTGAACAGAATGAATCAGGAAGACTCTTTATCGCAGAAATGGAGAGATGCACTTCTTGAAGCTGCTGGTCTTGCTGGCTTCGTAGTTCTAAATTCAAGGAATGAAAGGGAGGCTATCAATCATATTGTTGAAAAAATTACTCTTTTGCTTGATAAGACAGACTTGTTTGTCGCTGATAATCCAGTGGGAGTTGAATCCCGAGTGCAAGATACGACTCAACAACTAGGCATCGAACAATCAAATAATGTTCTACTCCTAGGGATGTGGGGTATGGGGGGAACCGGTAAAACAACCATTGCAAAAGCCATTTACAACAAAATTGGCCGCAATTTCGAAGGTAGGAGTTTCCTTGCAAATATTAGGGAAACTTGGGAGCAAACTACTCATAAAGTTTCTTTACAAGAACAACTTTTATCAGATATCTTCAAAGAAACAACAACCAAGATACAAAACATTGAGTCTGGGAAACTTACATTGAAGGATAGACTCTGTCATAAAAGAGTACTTCTCGTACTTGATGATGTGAATAGTTTGGACCAACTAAAAGCTTTGTGTGGAAATCGTGAATGGTTTGGTCCAGGGAGTAGAATAATAATCACAACCAGAGATAAACATATACTTAGAGGGCTAAGAGTTGACAAAGTATGTGCAATGAGAGTAATGGATAAAAATGAATCAATTGAACTTTTTAGTTTGAATGCATTCAAGCAACCGAGTCCTATAAAACAGTTTGCTGAAATTTCTAGAAAAATTGTTGAGTACTGTGGGGGATTGCCACTAGCTCTGGAAGTCCTTGGTTCCTATTTGTTTGAAAGGGGAGTAAGAGATTGGAAGTGTGTATTAGAGAAAATCAAAATAATTCCCAATGATCAAGTACAACGGAAGTTAAAAATAAGCTATGATGGTTTAAGTGATGATACTGAGAAAGAAATATTTCTAGACATAGCATGTTTCTTTATCGGGATGGACCGAAATGATGTTATACAAATATTAAATGCGTGTGGACTTTTTGCAGAAATCGGAATAAGTGTGCTTGTTGAGCGAAGCCTAGTAACTGTTGATGATAAAAACAAACTTGGAATGCATGATTTGTTACGAGATATGGGAAGAGAAATCATTCGTGAAAAATCACCAAAAGAGCCTGAGGAACGTAGTAGGTTATGGTTTCATGAGGACGTGCTTGATGTTTTATCTGATCGGAGTGGAACAAAAGCTGTTGAGGGATTGGCTTTGAAGTTGCCAATAGCTAGTTCAAAATGTTTTAGTACTAAAGCATTTAAGAAAATGAAGAGACTCAGATTGCTTCAACTTGTTGGAATAAGACTTGATGGCGATTTCGAATATCTTTCAAGAAATTTAAGGTGGTTATGTTGGAATGGATTTCCTTTAACATGCATACCTTCAGATTTTTATCAACGAAATATAGTTTCTATGGAGTTAGAAAACAGCAATATGAGAGTTGTGTGGAAAGAAACCCAGAGAATGGAGATGCTGAAAATCCTAAACCTTAGTCATTCTCATCATCTGATGCAGACCCCAGACTTCTCAAATTTGCCTAATCTTGAAAAGCTAATACTTGTAGATTGTCCAATGTTATCTGAGGTTTCCAACAGCATTGGAGAACTCAATAAAATTCTTTCAATAAATTTGGAAGACTGTATTAACCTATGTAACCTTCCAAGAAGCATTTATAAGTTGACATCTCTTAAAACTCTAATTCTCTCAGGGTGTTTAATGATTGACACGTTGGAAGAGGACATAGAACAAATGGAATCTTTAACCACTCTGATTGCAAATAACACTGGAATAACAAGGGTTCCGTTTTCTGTAGTGAGATCAAAAAGCATTGGCTATATTTCCTTGTGCGGCTATGAAGGATTCTCACGAGATGTGTTTCCATCTATCATTTGGTCTTGGATGTCTCCAACAAATAACTTTCCATCCCAATTTCAAACCTCTACTATCATGTCATCTCTTGTTCCTCTTGATGTGCCACATAGTAGTTCCCAGGAGCTATCATCGATTTCCAAGTATCTTCCAAATCTTAGAAGTCTTTGGGTGGAGTGCAGCTCGGAAGATCAACTTTCTCTTGATACAACAATAATTTTGGAGGCATTGTGCACCACAAATTCTAAAGAATTGGAACCAACAACAACTACATCACAAGTATCAAAAATTTCCTTGAAATCTCTTTTCATTCAATTGGGAATGAATTGCCAAGTTGCCAATATTTTGAAAGAGAAAATTTTACAGAATACGACTGTTGATGAGAGTGGTGGTTGTGTGCTCCTGGGTGATAGTTACCCCGATTGGTTAAGTTTTAATTGTGATGGTTCTTCTGTAATTTTTGAAGTTCCTCAAGTAGAAGGGCATAATTTGAAGTCATTGATGTGCATTGCCTATTCTTCAACTCCGGATAACATAACATCGGATGGACTTATAAGTGTGTTAGTGAAAAATTACACAAAGGCCACCATTCAGCTCTATAAGAGAGAGACATTAGCTTCCTTTAAGGATGAGGAGGGGGAGAGACTAGTATCAAGTATAGAACCCGGAGACAGAGTGGAAGTTGTTGTTGTTTTTGAGAGTGGTTTCATTGTGAAGAAAACAACCATTTATCTCATTTATGATTAG	3108	0.3774	MSFSKPRSKVPPLTRRELVKTQIAKSITDSVKRSTEASDIRSYEVFLSFRGEDTRASFTSHLHASLQNDGISVFMDDDSLQRGDHISTSLVKAIEDSRVSVIVFSTNYADSRWCLDELVKIMECRRTIGQVVLPVFYGVDPSEVRHQTGQFGQAFQTLLNRMNQEDSLSQKWRDALLEAAGLAGFVVLNSRNEREAINHIVEKITLLLDKTDLFVADNPVGVESRVQDTTQQLGIEQSNNVLLLGMWGMGGTGKTTIAKAIYNKIGRNFEGRSFLANIRETWEQTTHKVSLQEQLLSDIFKETTTKIQNIESGKLTLKDRLCHKRVLLVLDDVNSLDQLKALCGNREWFGPGSRIIITTRDKHILRGLRVDKVCAMRVMDKNESIELFSLNAFKQPSPIKQFAEISRKIVEYCGGLPLALEVLGSYLFERGVRDWKCVLEKIKIIPNDQVQRKLKISYDGLSDDTEKEIFLDIACFFIGMDRNDVIQILNACGLFAEIGISVLVERSLVTVDDKNKLGMHDLLRDMGREIIREKSPKEPEERSRLWFHEDVLDVLSDRSGTKAVEGLALKLPIASSKCFSTKAFKKMKRLRLLQLVGIRLDGDFEYLSRNLRWLCWNGFPLTCIPSDFYQRNIVSMELENSNMRVVWKETQRMEMLKILNLSHSHHLMQTPDFSNLPNLEKLILVDCPMLSEVSNSIGELNKILSINLEDCINLCNLPRSIYKLTSLKTLILSGCLMIDTLEEDIEQMESLTTLIANNTGITRVPFSVVRSKSIGYISLCGYEGFSRDVFPSIIWSWMSPTNNFPSQFQTSTIMSSLVPLDVPHSSSQELSSISKYLPNLRSLWVECSSEDQLSLDTTIILEALCTTNSKELEPTTTTSQVSKISLKSLFIQLGMNCQVANILKEKILQNTTVDESGGCVLLGDSYPDWLSFNCDGSSVIFEVPQVEGHNLKSLMCIAYSSTPDNITSDGLISVLVKNYTKATIQLYKRETLASFKDEEGERLVSSIEPGDRVEVVVVFESGFIVKKTTIYLIYD	1035

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g05526	1035	Gene3D	Ribonuclease Inhibitor	569	848	IPR032675	-
	Vifa1g05526	1035	Pfam	NB-ARC domain	225	443	IPR002182	GO:0043531
	Vifa1g05526	1035	Gene3D	-	215	374	IPR027417	-
	Vifa1g05526	1035	ProSiteProfiles	TIR domain profile.	41	208	IPR000157	GO:0007165
	Vifa1g05526	1035	SUPERFAMILY	L domain-like	569	891	-	-
	Vifa1g05526	1035	PRINTS	Disease resistance protein signature	243	258	-	-
	Vifa1g05526	1035	PRINTS	Disease resistance protein signature	651	667	-	-
	Vifa1g05526	1035	PRINTS	Disease resistance protein signature	413	427	-	-
	Vifa1g05526	1035	PRINTS	Disease resistance protein signature	320	334	-	-
	Vifa1g05526	1035	SMART	AAA_5	240	380	IPR003593	GO:0016887
	Vifa1g05526	1035	SUPERFAMILY	Toll/Interleukin receptor TIR domain	38	184	IPR035897	-
	Vifa1g05526	1035	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	43	865	IPR044974	GO:0006952
	Vifa1g05526	1035	FunFam	Disease resistance protein (TIR-NBS-LRR class)	39	210	-	-
	Vifa1g05526	1035	Gene3D	-	378	462	IPR042197	-
	Vifa1g05526	1035	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	207	473	IPR027417	-
	Vifa1g05526	1035	SMART	till_3	42	182	IPR000157	GO:0007165
	Vifa1g05526	1035	Pfam	TIR domain	43	207	IPR000157	GO:0007165
	Vifa1g05526	1035	SUPERFAMILY	"Winged helix" DNA-binding domain	449	555	IPR036390	-
	Vifa1g05526	1035	Gene3D	-	37	214	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g05526	Vifa-Chr1	857743741	857747867	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g05526	38	768	WRKY Transcription Factor Family	AT4G12020	30.749	1.84e-84	298

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g05526	-		-	tpra:123910008	1584.7