Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05516 ATGAAACCATTGATGAACTTCAAAACCGTAATCAGCACCCTCTTCTGCTTTTCCATCTCACTCTTTCCCCTTCAAGCCTACGACCCAATTGACCGTTATACCCTCAATTGTGGCACAACAGGAAACTCTACCGACGGAGAAAGAACATGGACAGGAGACACAAACTCAAAACTTTTGTTATCACCACAAAACAACAACCCAACAACAATCTCTGTTCCAACAACACCACAAAAACCTTCCATCAACAAAACCCCTTATGCAACAGCTCGTTTATCACACTCAATATTCAACTACTCTCTCCCCGTCACTCAAGGTCCTAAATTCCTCCGTCTCTTTTTCTACCCTTCTACCTATTCCAACGGTTTCAACCGTTACGATGCTTCCTTCACCGTTGTATCTAACGGATTCACACTTCTTAAGGATTTTAATGCTTCGTTAAACGCTGATGTTGGAGGTGTTGATATTATATTCAAAGAATATGTTATCAACGTTGGTGATGATCAAAGGCTTGATTTGAGTTTTATTCCAAGTAGTGGAAATTCTAATAACTATGCTTTCATTAATGGAATTGAAGTCTTATCCATGCCTGATGATCTCTATTATACACCAACCACTGATTCTGGTTTTCCACTTGTGGGGTCCACCATCATACCAGCATATAGTATTTCAACCAACGTTGCACTTGAGACAGATTACAGAATCAAAGTTGGAGTGCAAGCAAACTCACCAAAAATTCAAGACACAGGTATGCTCCGAAACTGGAACATAAACGACACAGACTACTTAAGAACTCCAACAGCACGTGACTCTGTCTCTGAAGACTTAATAGGAAGGAACATCACCGTAAACCCCGATTACGTGGCACCCAAAGACCTCTACAGATCATCACGTGGCTTGGGCACAAATTCTACTCTCAACAAACTCTTAAACCTAACTTGGGAATTCCCAATTGATTCTGGTTTCTTTTACTTGATAAGGCTCCACTTCTGTGAACTCGACCCCAGTATAACTACCGAAGGCAATAGAGTCTTCATCGTTTATTTACAAGGAAACGTCGCGGAAGAACAAGCAGATGTTATAAAATGGACCGTTGGTAAACAAGGGGTTGCCGTGCAAAGAAACTACGCCGTTTCAGTTCCAAAGAATAGTAATAACAAAAAAGTTAATTTCTCTATTCAAATGCATCCTTATGGTGATGGTAGAACCACCGACTTCAGTGACCCGTTTTTAAACGGACTTGAAATTTTCAAAATCAGTGATGTGGGTTCAAAGAATCTAGCTGGACCCAACCCGGATCCGGTACAGTATCCGGTTCTAGAGAAACAGAAAAGTAAAAGCATAAGTGGAACGACAATACTTGGCGTCGTTTTGGGAATCGTCTTCGTCATTGTTTTCGTTTCCCTTGTCGTTTTCTTTGTTTGTAGAAAAAAAAGACAAACGAAAGAGGAAAAGGCTACAACGACAAAAGAGTCAAAGTCTTCAGCCACTTCGAAGTGGGGTCCACTGTCGTTTGCAACGACGAAGTCAAGCACTACTCAAAACTCAAATCTACCGTCAGATCTCTGCCGCAGCTTCTCACTCCTCGACATACGCGCCGCCACGAACAACTTTGACGAACTCTTCATCGTCGGCGTAGGAGGATTCGGCCATGTCTACAAAGGCTACATCGACAACGGTTCAACACCGGTCGCGATCAAGCGTCTCAAACCGGGTTCACAGCAAGGAGAAAACGAGTTCATCAACGAGATCGACATGCTTTCAAATCTCCGGCACCTTCACCTCGTTTCTCTAATCGGTTACTGCAACGAGAACAATGAAATGATCATCGTCTACGATTTCATGGCGCGTGGAACCCTACGCGATCATCTCTACAACACTGATAACCCTGCTATATCATGGAAACAGCGGTTGAAGATTTCAATAGGCGCGGCGCGTGGTTTACACTACCTTCATACAGGTGCGAAACATACAATCATTCACCGTGACGTGAAAACAACGAATATTCTGTTAGATGAGAAATGGATCGCGAAGGTTTCTGATTTTGGGCTTTCTCGAATTGGGCCTACGGGTGTAACCAAGGCCCATGTTAGCACTGTTGTTAAAGGTAGCGTTGGTTATTTAGACCCTGAGTATTATAAACGACAGCGTTTAACAGAGAAATCTGACGTGTACTCTTTCGGAGTGGTTTTATTTGAGATACTCTGCGCTAGGCCACCTATTATTAGAACTGCGGAAAAGAAACAGGTGTCACTCGCTGATTGGGGGAGATTATGTTACAAAAGTGGGGCCCTCGGGAGTATCGTGGACCCTTCTGTGAAGTGGAGTATAGCGCCGGAGTGTTTGAAAAAATTCGGTGAAATTGCGGTTAGTTGTTTGTTGGAAGATGGAACGATGAGACCGTCGATGAACGACGTCGTATGGATGTTGGAATTTGCCTTGCAGTTACAAGAGAGTGCGGAACAACGTGAGGGTGTTGTTGTGGATGCTGTTGTTGTTGGTAATGACGTGGAAGGTGGTGAAAGAAGAAAGGAAAATGATGATGATGATGATGTGTTTAGTAGTACTGGGGCGAATATTGGATATGTTTCGGATTTAAATAAGAGTACTGAAGTGAGTGTGAGTACTATGACTGGTAGTAGCAGTGGGGAGAATAGCTATGGTTTTAATAAGGAAAGTGTTTTTTCTGAAATTGTGGATCCAAAAGCACGTTGA 2712 0.4288 MKPLMNFKTVISTLFCFSISLFPLQAYDPIDRYTLNCGTTGNSTDGERTWTGDTNSKLLLSPQNNNPTTISVPTTPQKPSINKTPYATARLSHSIFNYSLPVTQGPKFLRLFFYPSTYSNGFNRYDASFTVVSNGFTLLKDFNASLNADVGGVDIIFKEYVINVGDDQRLDLSFIPSSGNSNNYAFINGIEVLSMPDDLYYTPTTDSGFPLVGSTIIPAYSISTNVALETDYRIKVGVQANSPKIQDTGMLRNWNINDTDYLRTPTARDSVSEDLIGRNITVNPDYVAPKDLYRSSRGLGTNSTLNKLLNLTWEFPIDSGFFYLIRLHFCELDPSITTEGNRVFIVYLQGNVAEEQADVIKWTVGKQGVAVQRNYAVSVPKNSNNKKVNFSIQMHPYGDGRTTDFSDPFLNGLEIFKISDVGSKNLAGPNPDPVQYPVLEKQKSKSISGTTILGVVLGIVFVIVFVSLVVFFVCRKKRQTKEEKATTTKESKSSATSKWGPLSFATTKSSTTQNSNLPSDLCRSFSLLDIRAATNNFDELFIVGVGGFGHVYKGYIDNGSTPVAIKRLKPGSQQGENEFINEIDMLSNLRHLHLVSLIGYCNENNEMIIVYDFMARGTLRDHLYNTDNPAISWKQRLKISIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWIAKVSDFGLSRIGPTGVTKAHVSTVVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLFEILCARPPIIRTAEKKQVSLADWGRLCYKSGALGSIVDPSVKWSIAPECLKKFGEIAVSCLLEDGTMRPSMNDVVWMLEFALQLQESAEQREGVVVDAVVVGNDVEGGERRKENDDDDDVFSSTGANIGYVSDLNKSTEVSVSTMTGSSSGENSYGFNKESVFSEIVDPKAR 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05516 903 SUPERFAMILY Protein kinase-like (PK-like) 511 812 IPR011009 -
Vifa1g05516 903 MobiDBLite consensus disorder prediction 837 856 - -
Vifa1g05516 903 FunFam Receptor-like protein kinase FERONIA 509 613 - -
Vifa1g05516 903 ProSiteProfiles Protein kinase domain profile. 537 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05516 903 FunFam FERONIA receptor-like kinase 32 196 - -
Vifa1g05516 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672|GO:0006468
Vifa1g05516 903 Gene3D - 227 419 - -
Vifa1g05516 903 Gene3D - 32 196 - -
Vifa1g05516 903 Gene3D Phosphorylase Kinase; domain 1 500 613 - -
Vifa1g05516 903 SMART serkin_6 537 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05516 903 Pfam Malectin-like domain 35 418 IPR024788 -
Vifa1g05516 903 FunFam FERONIA receptor-like kinase 226 419 - -
Vifa1g05516 903 Gene3D Transferase(Phosphotransferase) domain 1 614 833 - -
Vifa1g05516 903 CDD STKc_IRAK 543 810 - -
Vifa1g05516 903 PANTHER OS03G0124300 PROTEIN-RELATED 8 487 IPR046957 GO:0004672
Vifa1g05516 903 ProSitePatterns Protein kinases ATP-binding region signature. 543 566 IPR017441 GO:0005524
Vifa1g05516 903 FunFam Receptor-like protein kinase FERONIA 614 829 - -
Vifa1g05516 903 Pfam Protein tyrosine and serine/threonine kinase 543 806 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05516 Vifa-Chr1 856474135 856476981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05516 18 903 Receptor kinase-like Gene Family AT3G51550 46.981 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vifa1g05516 Malectin_like 4.2e-33 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05516 - - psat:127121083 1563.13