Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05511 ATGGAAGACAAAGACAGAGCACCTCCCGATCCCGCAACCGCCGGAGAGTTCGTCGGCAACTCGAGCTGGTCTCTCAGCGTCGATGATTCCGATGGAAGTCATTTCTTCTCCGGCGATAGAGATGGAACCATGTTCGGTGACATCGGCTGGGATCTTGTACCTGACAGAATCGGAGCAAGCGAGGGATCGTTGCCTCCGGTTCAAACCGGTTCGATTGAACAAGCACCGACGTCGTCTTACAGGTCAAATAATCAATCCGTTTCTTCAAGCTCCAGTGAGGATCCACCGGAGAAATCTACCGTCTCGGAAGAAAAACCGCCGGAAATACCGAGTAAAAGTAAAAAGAAAGGGCAAAAGCGTATACGGCAGCCGCGGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTCGAGGATGGCTACAGATGGCGAAAGTATGGTCAGAAAGCAGTTAAAAATAGCCCATTTCCTAGAAGCTATTATAGATGCACAAATAGTAAATGCACGGTGAAAAAAAGGGTTGAACGCTCTTGTGAGGATCCAACTATTGTTGTAACAACATATGAAGGCCAACACTGTCATCACACAGTTGGATTTCCTCGAGGTGGAATCATAAGTCATGAAGCTTCCTTTACTGGCCAATTTGCCCCAACAATGCCTCAATTCTATTATCCTATTCAAATACCTACAGAATCAAACACTTGCACTACTACTGTTTCTCAGCCTAGCCAACCACATAATGATCATAAAGCTGGAAGATTGAGTAGGGCTACAACGGCTGTGTCTGATGCTTCGCCGCCACAGCATCCGACTGATGAAGGACTACTTGGAGACATTGTACCCCGTGGAATGCGCAGCAGGGAAGAGAGAAATATTTGA 879 0.4676 MEDKDRAPPDPATAGEFVGNSSWSLSVDDSDGSHFFSGDRDGTMFGDIGWDLVPDRIGASEGSLPPVQTGSIEQAPTSSYRSNNQSVSSSSSEDPPEKSTVSEEKPPEIPSKSKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSCEDPTIVVTTYEGQHCHHTVGFPRGGIISHEASFTGQFAPTMPQFYYPIQIPTESNTCTTTVSQPSQPHNDHKAGRLSRATTAVSDASPPQHPTDEGLLGDIVPRGMRSREERNI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05511 292 MobiDBLite consensus disorder prediction 234 292 - -
Vifa1g05511 292 MobiDBLite consensus disorder prediction 17 31 - -
Vifa1g05511 292 MobiDBLite consensus disorder prediction 234 248 - -
Vifa1g05511 292 Pfam WRKY DNA -binding domain 138 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g05511 292 MobiDBLite consensus disorder prediction 1 125 - -
Vifa1g05511 292 MobiDBLite consensus disorder prediction 64 96 - -
Vifa1g05511 292 Gene3D WRKY domain 124 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g05511 292 FunFam WRKY transcription factor 57 123 197 - -
Vifa1g05511 292 SMART WRKY_cls 137 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g05511 292 ProSiteProfiles WRKY domain profile. 132 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g05511 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 81 238 IPR044810 GO:0003700
Vifa1g05511 292 MobiDBLite consensus disorder prediction 97 114 - -
Vifa1g05511 292 SUPERFAMILY WRKY DNA-binding domain 129 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05511 Vifa-Chr1 855127808 855132230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05511 20 286 WRKY Transcription Factor Family AT1G69310 49.658 4.20e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g05511 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05511 - - gmx:100170676 378.637