Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05509 ATGGCTGATCCTGAGGTTAACTGGAATAGGTTAGATGTAATGAAATTCTATGTAGGGGGAGCTGGACTATTTTCTGGCATTACTGTGTTACTCTACCCCATCTCGGTTGTGAAGACTAGGATGCAGGTTGCTTCGAAGGAGACTGCAGAGAGAACTGCATCTTCTGTTGTGAAAGGATTGCTTAAGAAAGACGGCATCCGTGGTTTGTATAAAGGGTTTGCAACGGTTCTCACTGGAACAATACCTGCCAGAATCGTGTTTCTCACTTTCTTAGAGACCACGAAGGAAGCTTCCTTCAAGATAGTTAAACCGTTTGTACTATCTGAAACTAGTCAGGCTGCTATAGCGAATGGCATTGCAGGCATGGCGTCGTCGATTGTGTCACAAGCTGTGTATACTCCAATCGATGTGATTAGCCAAAAGTTGATGGTGCAAGGATACTCTGGCCATGCCCAGTATAGTGGTGGTTTGGATGTTGCTCGGAAGTTGATAAAATCCGAGGGCTTCAGGGGACTATACAGAGGGTTTACTCTATCTGTTATGACTTATTCACCATCTAGCGCTGTATGGTGGGCGACTTACGGCTCAAGTCAACGCTTCTTATGGAGATTCTTGGAAGATGATGTCAAATCTGAGGAAGCTACTCCTAGCCTACCAAAGATTGTTTTAGTTCAGGCAGGAGGGGGTCTCATTGCTGGTGCTACTGCATCGTGCATTACAACTCCACTGGATACAATCAAGACACGGTTACAGGTGGTGGGACATGGAAAGAAAATCTCTATTAAACAAGTTGTTAAGGAATTGATCAGTGAGGATGGTTGGAAAGGTGTATATAGAGGATTTTGTCCAAGATTGGTCAGCACATCAGCATGGGGAACTTCAATGGTATTGGCTTACGAATATCTGAAGCGCCTATGCGTAAAAGATAAAGAAGCAGCTGGTCCCAAAAAGTGA 954 0.4444 MADPEVNWNRLDVMKFYVGGAGLFSGITVLLYPISVVKTRMQVASKETAERTASSVVKGLLKKDGIRGLYKGFATVLTGTIPARIVFLTFLETTKEASFKIVKPFVLSETSQAAIANGIAGMASSIVSQAVYTPIDVISQKLMVQGYSGHAQYSGGLDVARKLIKSEGFRGLYRGFTLSVMTYSPSSAVWWATYGSSQRFLWRFLEDDVKSEEATPSLPKIVLVQAGGGLIAGATASCITTPLDTIKTRLQVVGHGKKISIKQVVKELISEDGWKGVYRGFCPRLVSTSAWGTSMVLAYEYLKRLCVKDKEAAGPKK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05509 317 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 311 - -
Vifa1g05509 317 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Vifa1g05509 317 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085
Vifa1g05509 317 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Vifa1g05509 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 97 IPR018108 -
Vifa1g05509 317 Pfam Mitochondrial carrier protein 115 202 IPR018108 -
Vifa1g05509 317 Pfam Mitochondrial carrier protein 21 98 IPR018108 -
Vifa1g05509 317 Pfam Mitochondrial carrier protein 227 309 IPR018108 -
Vifa1g05509 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 200 IPR018108 -
Vifa1g05509 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 305 IPR018108 -
Vifa1g05509 317 Gene3D Mitochondrial carrier domain 13 314 IPR023395 -
Vifa1g05509 317 SUPERFAMILY Mitochondrial carrier 9 302 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05509 Vifa-Chr1 854633991 854636343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05509 3 306 Chloroplast and Mitochondria Gene Families AT5G15640 70.588 7.53e-155 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05509 K15121 - gmx:100819519 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05509 1 854633991 854636343 Vifa1g00006 1 1171301 1178080 PCT