Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05507 ATGTTCTTCTCTTTCCTTAAACATTGTCCATGCATTCTTCTCTTCCTATTGTTTACGCTGTTTTACACTTCAACAGAAGCTTATGATCCACTTGACCCAAATGGAAACATCACAATCAAATGGGATATCATAAGCTGGGCACCTGATGGTTATATTGCTGTCGTTACAATGAACAACTTCCAACGGTATCGTCGCATATCGGCACCAGGGTGGTCATTAGGATGGACATGGGCAAAGAAAGAGGTAATATGGGCCATGGTGGGAGGGCAGACAACTGAACAAGGAGATTGCTTAAAGTTCAAGGAAACCATCCCACATTGTTGTGAAAGAACTCCAACAATCGTAGATTTACTTCCCGGTACGCCTTATAATCAACAAATTGCAAATTGTTGCAAAGGTGGTGTACTCAGCTCATGGACACAAGATCCAATAAATTCGATCGCAGCGTTTCGAGTCACCATCGGTAGAGCTGGCACTACTAGCAAAACTGTCAGACTGCCACAAAATTTCACATTGAAAGCACCAGGACCAGGTTATACTTGCGGCCCGACAAAAATTGTGAAACCTACTAAATTCATATCAAAAGACAAAAGGAGAGTGACACAAGCACTTATGACATGGAATGTGACATGCACATATTCACAATTTCAAGCTCAAAAACTTCCAACTTGCTGTGTTTCCCTTTCATCTTTCTATAACGATACTATCGTACAGTGCCCGACATGTTCGTGCGGTTGCCAAGGCAACACGGCCCAATCAGGAAGTTGTGTAGATCCAAGCGCGCCACATTTGGCCTCGGTTGTTAACAACTCTGGAAATAATAGCATTGCTCCTTTGGTTCGATGTACTAGTCATATGTGTCCGATCCGAGTTCACTGGCACATTAAGCTCAACTACAGGGAGTATTGGCGCGTAAAAGTTACTATAAATAATTTCAATTACAGGATGAATTACTCGGATTGGAACTTGGTTGTTCAACATCCGAACTTTGACAATCTAACTCGAATTTTCAGTTTCAATTACGAATCAGTAATTCCCTATGGATCGATAAATGATACAGCAATGCTATGGGGAGTTAAATACTACAATGATTTCCTCATGCATGCTGGTCCTAGTGGAAATGTACAGTCAGAGCTACTTTTTGGTAAGGATAAATCGACTTTTATGTTCGATAAAGGTTGGGCGTTTCCTCGGAGGATCTATTTCAATGGCGACATCTGCGTGATGCCACCACCCGACGCTTATCCATGGTCACCGAATAACGGTTCCAAACAAGAGGTTTCTTTTCTTTCTTTGACGATGGCGTTGTTAGTAGCATTGGTGTTTTACGCGTATGTTTAA 1341 0.4191 MFFSFLKHCPCILLFLLFTLFYTSTEAYDPLDPNGNITIKWDIISWAPDGYIAVVTMNNFQRYRRISAPGWSLGWTWAKKEVIWAMVGGQTTEQGDCLKFKETIPHCCERTPTIVDLLPGTPYNQQIANCCKGGVLSSWTQDPINSIAAFRVTIGRAGTTSKTVRLPQNFTLKAPGPGYTCGPTKIVKPTKFISKDKRRVTQALMTWNVTCTYSQFQAQKLPTCCVSLSSFYNDTIVQCPTCSCGCQGNTAQSGSCVDPSAPHLASVVNNSGNNSIAPLVRCTSHMCPIRVHWHIKLNYREYWRVKVTINNFNYRMNYSDWNLVVQHPNFDNLTRIFSFNYESVIPYGSINDTAMLWGVKYYNDFLMHAGPSGNVQSELLFGKDKSTFMFDKGWAFPRRIYFNGDICVMPPPDAYPWSPNNGSKQEVSFLSLTMALLVALVFYAYV 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05507 446 PANTHER PROTEIN COBRA 15 436 IPR006918 GO:0010215|GO:0016020
Vifa1g05507 446 Pfam COBRA-like protein 51 214 IPR006918 GO:0010215|GO:0016020
Vifa1g05507 446 PIRSF COBRA 1 446 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05507 Vifa-Chr1 854208281 854211356 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05507 13 444 COBRA Gene Family AT3G02210 71.363 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05507 - - gmx:100783820 779.63