Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05504 ATGATGTTCTTCCATTTCCTTAAACATTGTCCATGCATTCTTCTCTTCCTTCTGTTTACTTTCTTTTACACTTCAACAGAAGCTTATGATCCACTCGACCCGGACGGAAACATCACGGTGAAATGGGATATTATAAACTGGACACCTGATGGTTATGTTGCTGTCGTTACAATGAACAACTTCCAACTGTATCGTCATATACCGGCACCTGGATGGTCATTAGGATGGACATGGGCAAAGAAAGAGGTAATATGGGCCATGGTGGGAGGGCAGACAACTGAACAAGGAGATTGTTCAAAATTTAAGGGAGTCATCCCGCATTGTTGTAAAGGAAATCCAACGGTCGTAGATTTATTTCCCGGAGTGCCTTATAATCAACAAATTGCTAATTGCTGCAAAGGCGGTGTACTCACCTCATGGGCTCAGGATCCAGCAAACGCTGTTTCGGCATTTCAACTCAGTGTTGGTAGAGCTGGCAGCTCTAAAAAAACCGTCAGATTGCCGCAGAATTTCACCTTGAATACACCCGGACCGGGATATACATGCGGGCCAGCGAAACTTGTGAAACCTACTAGATTCATAACACCGGACAAAAAGAGAGTGACTCAAGCACTTATGACATGGAATGTGACATGCACATATTCACAGTTTCTTGCTCAGAAAACTCCCACTTGCTGTGTCGCTCTTTCATCTTTCTATAACGATACTATTGTACCGTGCCCGACATGTTCGTGCGGCTGCCAAGGGAATTCAGCCCAAACGGGAAGCTGCGTAGATCCAAGTGCGCCAGCGTCACATTTGGCCTCGGTTGTTTCCAGCCACGAAAAGAATAATATTACACCTTTGGTTCGATGTACTAGTCATATGTGTCCAATCCGAGTTCACTGGCACATTAAGCTCAACTACAAGTTGTATTGGCGCGTAAAGGTCACTATTACTAATTTCAATTACAGGATGAATCACTCGAATTGGAACTTGGTTGTTCAACATCCAAACTTCGACAATCTTACTCAAATTTTCAGTTTCAACTACAAATCAATAAATCCCTACGGCTCAATAAATGATACAGCCCTGCTTTATGGAGTTAAATTCTACAATGATTTCCTCATGCAAGCTGGTCCAATCGGTAATGTACAATCCGAGCTACTTTTCCAAAAGAATCTCACAACTTTTACTTTCGAAAAAGGTTGGGCGTTTCCTCGGAGAATCTATTTCAACGGCGACAACTGTGTGATGCCACCGCCTGACGCATATCCATGGTTACCTAATACTGGTTCCAAACAAGAGGTTTCCCTCCTTGCTTTGATAATGGCATCCTTGGTGGCAATAGTACTTCATGCACATTCTTAA 1350 0.4319 MMFFHFLKHCPCILLFLLFTFFYTSTEAYDPLDPDGNITVKWDIINWTPDGYVAVVTMNNFQLYRHIPAPGWSLGWTWAKKEVIWAMVGGQTTEQGDCSKFKGVIPHCCKGNPTVVDLFPGVPYNQQIANCCKGGVLTSWAQDPANAVSAFQLSVGRAGSSKKTVRLPQNFTLNTPGPGYTCGPAKLVKPTRFITPDKKRVTQALMTWNVTCTYSQFLAQKTPTCCVALSSFYNDTIVPCPTCSCGCQGNSAQTGSCVDPSAPASHLASVVSSHEKNNITPLVRCTSHMCPIRVHWHIKLNYKLYWRVKVTITNFNYRMNHSNWNLVVQHPNFDNLTQIFSFNYKSINPYGSINDTALLYGVKFYNDFLMQAGPIGNVQSELLFQKNLTTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNTGSKQEVSLLALIMASLVAIVLHAHS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05504 449 PIRSF COBRA 1 449 IPR006918 GO:0010215|GO:0016020
Vifa1g05504 449 PANTHER PROTEIN COBRA 16 439 IPR006918 GO:0010215|GO:0016020
Vifa1g05504 449 Pfam COBRA-like protein 52 215 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05504 Vifa-Chr1 853170360 853173314 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05504 14 448 COBRA Gene Family AT3G02210 74.771 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05504 - - gmx:100783820 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00003 1 171281 174242 Vifa1g05504 1 853170360 853173314 PCT