Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05503 ATGAGGTTTCTTATCTCATTTCTTTGTGTTCTTGTGTTGGTCTCTTATGCAGTTGCTTATGATCCTTTGGATCCAAATGGAAACATAACAATCAAATGGGATGTTATGTCTTGGACACCGGATGGCTATGTGGCGACAGTAACTGTCAACAATTTCCAAATGTTTCGACACATAATGAATCCAGGATGGACGTTAGGATGGACATGGGCTAAGAAAGAAGTTATATGGTCAATGGTAGGAGCTCAAACGACAGAACAAGGAGATTGTTCTAAATTTAAAGGCAACATACCTCATTGTTGCAAGAAAATTCCTACAGTTGTAGACCTTCTACCTGGTGTACCTTACAATCAACAGTTTTCGAACTGTTGTAAAGGTGGAGTTGTTGCGGCTTGGGGGCAAGATCCTTCGCAATCGATATCGGCTTTTCAAGTTAGTGTAGGACAAGGTGGAACCTCAAACAAAACGGTTAAACTTCCAAAGAATTTCACTCTTTTGGCTCCTGGACCTGGTTATACTTGTGGCCCTGCAAAGGTTGTTCCTTCCACAGTTTTTCTTACGACGGATAAGCGCCGAAAGACTCAAGCGTTGATGACATGGAATGTTACCTGCACATATTCACAATTTCTAGCAAGAAAGAATCCAAGTTGTTGTGTATCTTTATCATCATTCTACAATGAAACAATCACACCTTGTCCCTCTTGTGCATGTGACTGCCAAAACAAGAAGAACTGTGTAAAGAGTGACTCAAAAATTCTGAGCATGGTTGGAGCTCACACTCCAAAGAAAGACAATGAACCATTGATGCAATGTACTCATCATATGTGTCCAATTAGGGTTCATTGGCATGTGAAAACTAACTATAAGGACTATTGGCGCGTCAAAATCGCGGTAACGAATTTCAATTACAGGATGAATTATACTCTCTGGAGTCTTGCTATTCAACATCCAAATCTTAACAATGTCACACAAGTTTTCAGCTTCAATTACAAGCCACTTCTTCCCTATGAATCCATAAATGACACAGGAATGTTCTATGGAATGAAATACTTCAATGATCTACTAATGGAAGCTGGACCAAAGGGAAATATTCAATCAGAAGTATTACTTCAAAAAAACAATAAATTCACATTCAAACAAGGATGGGCATTTCCTCATAAGGTTTACTTCAATGGCGATGAATGCATGCTTCCTCCACCTGATACATACCCTTTTCTCCCTAATTCTTCACCTGCAACCATAGTTACCTTCAAGGCACTCATCTTCTCATTACTTTTACTCCTAGCAGTTTGGTAG 1293 0.3944 MRFLISFLCVLVLVSYAVAYDPLDPNGNITIKWDVMSWTPDGYVATVTVNNFQMFRHIMNPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGNIPHCCKKIPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSQSISAFQVSVGQGGTSNKTVKLPKNFTLLAPGPGYTCGPAKVVPSTVFLTTDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACDCQNKKNCVKSDSKILSMVGAHTPKKDNEPLMQCTHHMCPIRVHWHVKTNYKDYWRVKIAVTNFNYRMNYTLWSLAIQHPNLNNVTQVFSFNYKPLLPYESINDTGMFYGMKYFNDLLMEAGPKGNIQSEVLLQKNNKFTFKQGWAFPHKVYFNGDECMLPPPDTYPFLPNSSPATIVTFKALIFSLLLLLAVW 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05503 430 PANTHER PROTEIN COBRA 6 423 IPR006918 GO:0010215|GO:0016020
Vifa1g05503 430 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0016020
Vifa1g05503 430 PIRSF COBRA 1 430 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05503 Vifa-Chr1 853167508 853169872 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05503 3 429 COBRA Gene Family AT3G29810 65.438 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05503 - - gmx:100798678 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05503 1 853167508 853169872 Vifa1g00003 1 171281 174242 PCT
Vifa1g00002 1 167947 170665 Vifa1g05503 1 853167508 853169872 PCT