Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05497 ATGGATTACGACTTTAGCCTAGAAATAATTTCAATTCAACAACCAACCTTTACAATCCCAAAACATGATCCTTTTAGTAACAATTTCTACATTAATTTGAATTGCACCCAAACTAATTATCCCTTGCATATCAATGCCGCAAATTCAACCTTTGATTTTATGACCAAGGTGAATCGAACCTTGTTGGTTCCTTGTGATATCTTATGTAAATGTAATGAAGTTACAATATTAGATGAAGCTGCCAATATTTTCTTATATGACTCTTTTTCTTCTGTGCCTATTTCTTCTACCATATTAAAAGAAATTCTACCTCATCTTGGTGAATATGCTAGGGTGATGATTGCAGACAATGATGAAGGTCATAATATGTGGGAATTAGATGTGACACTTGATGTTATTACATGGTATAGTGAAGATCGTGATGCTGTGGTATCCCTATTTAATGTGGATATGTTGAAAAATGTTGGAATGGATGATTCTTTTTGTTACTCTACAAATCAATGTCCAATTTGTTTGGAGGAATTCTTAGATGGGTCAAATTCAAAATTGGGATATGTTGTGACAAAATGTTTACATATTTTTCATAGGGAGTGCATTTTTCAATGGTTCAAAAGATGCATGAATAGTGGTTTACCCTACTCATGTCCATTGTGCCGTAATCATCAAATAATCTAA 675 0.3289 MDYDFSLEIISIQQPTFTIPKHDPFSNNFYINLNCTQTNYPLHINAANSTFDFMTKVNRTLLVPCDILCKCNEVTILDEAANIFLYDSFSSVPISSTILKEILPHLGEYARVMIADNDEGHNMWELDVTLDVITWYSEDRDAVVSLFNVDMLKNVGMDDSFCYSTNQCPICLEEFLDGSNSKLGYVVTKCLHIFHRECIFQWFKRCMNSGLPYSCPLCRNHQII 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05497 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 223 IPR013083 -
Vifa1g05497 224 ProSiteProfiles Zinc finger RING-type profile. 168 219 IPR001841 -
Vifa1g05497 224 Pfam Ring finger domain 166 219 IPR001841 -
Vifa1g05497 224 SUPERFAMILY RING/U-box 167 221 - -
Vifa1g05497 224 SMART ring_2 168 218 IPR001841 -
Vifa1g05497 224 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 105 219 - -
Vifa1g05497 224 CDD RING-H2 168 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05497 Vifa-Chr1 852469233 852469907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05497 147 224 C3H Transcription Factor Family AT4G23450 33.333 3.15e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05497 - - psat:127099352 162.155