Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05490 ATGCTTAATGAAGTTTCACAATCTAGTTATCAAAAAGATCAAGATGGCTCAGAAGAATCTGAACCTGTTGAAACTAGGAATGGTGTTCCTCGATCAATATATCTGTGCCAGAGAGAGATTCAAGAATTTGCATCCATCAAAATTCAAACTGCTTTTAGGGGCTACCTTCTGAGTTTCTCCAATCTATCTTGTTACTTAATCTTTACTGCTAAAGTTTTTGGATCTGGAATAGCAAAGAAGGCTTTGAGGGCATTGAAAGGAATAGTAAAACTTCAAGAGATTATTCGTGGGCGAGCAGTGAGACGCCAAGCTATGAGTACTCTCAAGAGCTTGCAGTCCATTGTAAGTATTCAATCAAGGATATGTGCAAGGAGACTCCAAATGGTTGAAGGAAGATGGGATTCTGTTGAAGATGAAGAGACTCTTTATTCTAAAGACAAGATCATTAGGATGGACTCAAACAGCGAAAGAAAGTGGGATGACAGCACTTTATTGAAGGAAGAGGTAGATGCCTGTTGCATGATCAAGAAAGAAGGCATTATTAAGAGAGAAAGAATAAAAGAATACACATTTAATCATAGAAGGTCAGCAGAGTCAGAAAGAAGTAAAGTGAACGGAAGATGGAGGTAG 630 0.3825 MLNEVSQSSYQKDQDGSEESEPVETRNGVPRSIYLCQREIQEFASIKIQTAFRGYLLSFSNLSCYLIFTAKVFGSGIAKKALRALKGIVKLQEIIRGRAVRRQAMSTLKSLQSIVSIQSRICARRLQMVEGRWDSVEDEETLYSKDKIIRMDSNSERKWDDSTLLKEEVDACCMIKKEGIIKRERIKEYTFNHRRSAESERSKVNGRWR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05490 209 ProSiteProfiles IQ motif profile. 86 113 IPR000048 GO:0005515
Vifa1g05490 209 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g05490 209 PANTHER IQ-DOMAIN 5-RELATED 26 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05490 Vifa-Chr1 851701448 851702526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05490 2 209 IQD Protein Family AT5G13460 44.076 6.24e-47 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05490 - - gmx:100800192 256.914