Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05474 ATGAAGAAAAAACTGAATGGGGGCAAAGAGGTAATCCAACTATACAATTATACAAAATCTGTGATGACAATAGCATTCCAGCTTGCATTTGATGTCCACCTTCAAGATAATATAGCAGTTATGGCGCGACAGTATGTGCGCAGCGGATGGCTCTGTAACAGCTATAGATTCTATCTAGGTGTAGAACTACTAAAGAGCGAAGGCAGTGTCTCTTTGGCATCATTCAGATTTTGTATAATGCTGCTCTCTATAGTTTTATGTTGCTCTCAAAAACCTCATACTGCAGTTGTAATGCATTTGCAAAGGCCTCCAAAAGTTTCATATTGTGACTGCCATCGTGATTGTGGACCGTCGTAA 357 0.4006 MKKKLNGGKEVIQLYNYTKSVMTIAFQLAFDVHLQDNIAVMARQYVRSGWLCNSYRFYLGVELLKSEGSVSLASFRFCIMLLSIVLCCSQKPHTAVVMHLQRPPKVSYCDCHRDCGPS 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05474 118 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 48 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05474 Vifa-Chr1 850100827 850101285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05474 18 91 Homeobox Transcription Factor Family AT4G32880 39.450 2.10e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05474 K09338 - gmx:100797291 82.0333