Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05472 ATGGGTTCTGTTTGCTGTTGTTTGAGCTGTGATGATGTAGAGGATTATGTGAATCCAAATAATCCTGTGTATAGGAACTGCGTGTGTCTCAGTTGCTTGGTACAGAATCTTTTGAATGCGTACGCATCAATATTCCGTAGAGGGGAAGCACATTCAATTTCTTCCTCTCTTCAAGGAACGGCATCCATGACATCTGCAACATCACTTGATAATTCTCTATCGGACATCTACCGTTCTCCTCCAAGGCCTTTACCTTATGATGCAGAGCCTCGATTTTTCCGCTCACAACGTGATGGACTAGTTTCAAGGCGTGAGAAAAGCTCAAGTCATTCAAATGAGGAAACTGAACCTCTAAGAAGCGATGTAGATGTTGATCCAGAGCCTTTAAGCTCAGCTGACAAATGGAATGAATGTGCACGTGAAGATGAATCTAAGATATACCGTTCTAAGTCCGCATTAAGACTTTCATCAGCAAAATATACAACTGGAGTTGGACTCGTTTACACGTCATCGGAAGAAGAGGATATCTGTCCAACTTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACAAAATGCGCTCATCATTTTCACCTTGGTTGCATCTATGAGTGGATGGAAAGAAGTGACAACTGTCCAGTTTGTGGAAAGGAAATGGAATTCGATGAAACAACATACTCTTGA 690 0.4116 MGSVCCCLSCDDVEDYVNPNNPVYRNCVCLSCLVQNLLNAYASIFRRGEAHSISSSLQGTASMTSATSLDNSLSDIYRSPPRPLPYDAEPRFFRSQRDGLVSRREKSSSHSNEETEPLRSDVDVDPEPLSSADKWNECAREDESKIYRSKSALRLSSAKYTTGVGLVYTSSEEEDICPTCLEEYTKENPKIMTKCAHHFHLGCIYEWMERSDNCPVCGKEMEFDETTYS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05472 229 CDD RING-H2_AIRP1-like 173 221 - -
Vifa1g05472 229 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Vifa1g05472 229 SMART ring_2 177 217 IPR001841 -
Vifa1g05472 229 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Vifa1g05472 229 MobiDBLite consensus disorder prediction 98 135 - -
Vifa1g05472 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 226 IPR013083 -
Vifa1g05472 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 52 225 - -
Vifa1g05472 229 SUPERFAMILY RING/U-box 172 224 - -
Vifa1g05472 229 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05472 Vifa-Chr1 848854100 848857847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05472 1 226 C3H Transcription Factor Family AT5G15790 57.576 1.21e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05472 - - gmx:100777068 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05472 1 848854100 848857847 Vifa1g05472 1 848854100 848857847 ECH