Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05461 ATGTCAGACGAGGAACACCATTTCGAGTCCAAAGCTGATGCTGGAGCATCCAAGACATATCCACAACAAGCTGGAACCATTCGCAAAAATGGTCACATTGTTATCAAAAACAGACCCTGCAAGGTAGTTGAGGTTTCAACTTCAAAAACTGGGAAACATGGACATGCTAAGTGTCACTTTGTTGCTATTGATATCTTCACTGGGAAAAAGCTTGAAGATATTGTTCCTTCTTCTCATAACTGTGATGTTCCTCATGTTAATCGTACTGATTACCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTGCTGACAGAGAGTGGTGGTACAAAGGATGACCTAAAGCTCCCGTCCGATGATAGTCTGCTTTCGCAGATCAAGGATGGATTTAACGAAGGTAAAGATCTGATTGTGTCTGTCATGTCTGCCATGGGCGAGGAGCAGATTTGTGGCCTTAAGGACGTTGGCCCTAAGTAA 480 0.4333 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLKLPSDDSLLSQIKDGFNEGKDLIVSVMSAMGEEQICGLKDVGPK 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05461 159 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Vifa1g05461 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Vifa1g05461 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vifa1g05461 159 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Vifa1g05461 159 Gene3D - 86 158 IPR012340 -
Vifa1g05461 159 NCBIfam translation initiation factor IF-5A 17 152 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vifa1g05461 159 CDD S1_eIF5A 86 155 - -
Vifa1g05461 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vifa1g05461 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vifa1g05461 159 Gene3D - 1 85 IPR014722 -
Vifa1g05461 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Vifa1g05461 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vifa1g05461 159 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g05461 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05461 Vifa-Chr1 847087587 847088843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05461 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 88.679 6.14e-104 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05461 K03263 - thj:104808630 305.834