Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05455 ATGGTTCGTCAATCTAATTTGGTTATCATTGGTGTCTCTGTTGGTTTGGCCCTTGGAATTCTGATTTCTTGCCTCATATTTTTCGGCATAAGGTGGTGCAAGAAGCATTCTCATATTACACGATCTGCGAACGAGCCTAGTTTGACAACTCTCCCCATACGAACAAATGGAGTTGAAGCAAGTACCGACTTTAGTGCATCGATCACTAGTTCCGTAACCACGTCAAGGTCAGAAAATCTACAAAGAAATTCCAATTTCTCTTGGTGGAATCATCAAAACAAAGACCGGTTTGCTTCAGCATCAGGCATTCTAAAGTATTCGTACAAAGAACTTCAAAAAGCCACACAAAATTTCACAACTACCTTGGGAGAAGGATCATTTGGCACAGTTTATAAAGCGACAATGCCTACAGGAGAGGTGATAGCTGTGAAGGTGCTAGCACACAATTCCAAACAAGGGGAGAGAGAATTCCAAACAGAGGTGTCTCTGCTAGGAAGACTACATCACCGGAATCTTGTGAATCTGCTTGGATATTGTGTAGATAAAGGACAGCGCATACTGGTTTATCAGTTCATGAGCAATGGAAGTTTAGCAAGTATTTTATATGGTGAAGAAAAGAAGTTAAGTTGGGATGAAAGGCTGCAAGTTGCTATTGATATTTCACATGGAATAGAGTATCTTCATGAAGGAGCAGTCCCACCGGTTATACATCGTGATTTGAAGTCTCCCAACATATTGCTAGATGACACAATGAGAGCAAAGGTTGCTGATTTTGGCCTCTCAAAGGAAGAGATCTTCGATGGCCGAAATTCTGGTCTTAAAGCCATCCATCCTCATCAAAATTTGTTGGAATATGTTAACCTTGCTGCAATGGAACATGATGGTATAGATGAGATACTTGACAAGCAACTTGTTGGAAAATGCAATGTTTTAGAAGTGAGGCAACTTGCTAAAATTGCACACAAATGCTTACACAAATCACCTAAGAAAAGACCCTCTATAAGTGAAGTTTCTCAAAGCATATCAAGAATAAAGCAAAGAAGATTGCGTCATGTTATGGAAGATAACTTGTCATTTGCAAATAGTAATAACTTTTCAAGAACTTCGAGTCGATTAGATGATCGACAAGTTGAATTAAGTAGGATAGTTACCATGACCATCAAAGAAACTGTATGA 1176 0.392 MVRQSNLVIIGVSVGLALGILISCLIFFGIRWCKKHSHITRSANEPSLTTLPIRTNGVEASTDFSASITSSVTTSRSENLQRNSNFSWWNHQNKDRFASASGILKYSYKELQKATQNFTTTLGEGSFGTVYKATMPTGEVIAVKVLAHNSKQGEREFQTEVSLLGRLHHRNLVNLLGYCVDKGQRILVYQFMSNGSLASILYGEEKKLSWDERLQVAIDISHGIEYLHEGAVPPVIHRDLKSPNILLDDTMRAKVADFGLSKEEIFDGRNSGLKAIHPHQNLLEYVNLAAMEHDGIDEILDKQLVGKCNVLEVRQLAKIAHKCLHKSPKKRPSISEVSQSISRIKQRRLRHVMEDNLSFANSNNFSRTSSRLDDRQVELSRIVTMTIKETV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05455 391 Gene3D Transferase(Phosphotransferase) domain 1 268 366 - -
Vifa1g05455 391 Gene3D Transferase(Phosphotransferase) domain 1 192 267 - -
Vifa1g05455 391 Gene3D Phosphorylase Kinase; domain 1 78 191 - -
Vifa1g05455 391 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Vifa1g05455 391 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 90 191 - -
Vifa1g05455 391 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Vifa1g05455 391 ProSiteProfiles Protein kinase domain profile. 116 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05455 391 Pfam Protein tyrosine and serine/threonine kinase 118 264 IPR001245 GO:0004672|GO:0006468
Vifa1g05455 391 SUPERFAMILY Protein kinase-like (PK-like) 88 339 IPR011009 -
Vifa1g05455 391 SMART serkin_6 116 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05455 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Vifa1g05455 391 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 264 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05455 Vifa-Chr1 846761954 846765056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05455 102 261 Receptor kinase-like Gene Family AT3G19300 52.795 5.18e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vifa1g05455 PK_Tyr_Ser-Thr 9.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05455 - - gmx:100819995 645.195