Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05451 ATGGACCGACTACCGTGGAAGGAGGAAGAAGAAGCGGCGGTTGGCGGTGGAAAAAGTGGACCGCCGCAAAGACCGAATTTAAGTTTGCCGCCACGTACGGACGGGCTTTTCAGCGGCGGTTTTAGTCCCGGTCCTATGACTTTGCTCTCTAATATATTGACCGACGGTGATGACGGCAAGTCGTTCTCTCAGCTTCTCGCTGGTGCCATGGTGTCTCCGGTAGCCGCCACCTCTGACGCGCTTGATTCACCTGATTTCTTTTCACATCATCATCATCAGGTGTCCTTTGGATTGTCAAACCATCCGGCACCGGCACCGGCACAGGCACAGGCACAGGCACATGTCTCTTTTCAAGGAGGACAATCTAACATAGATATGTATAACCAAGCTGAACATTCATTGTCTGTATCAGAACCCACCGATCACGCTCCTCTCGCGGAACAAAGGTTGCAGTCTTCTTCGTTGAATGTTGATAAGCCTGCTGATGACGGTTACAATTGGAGGAAGTATGGACAGAAACACGTGAAAGGTAGTGAGTTTCCTCGAAGTTATTATAAGTGCACACATCCTAACTGTCCTGTTAAGAAAAAGGTCGAGCGGTCGCGTCAAGGTCATGTGACTGCGATTATTTATAAAGGAGAGCACAATCATCAACCTCCGAATCCTAACAAGCAATCCAAAGACACTAATGGGAATGCCGATTCATCTTATCAACAGATGGATCCAGAATCGAGTCACGTAGCAGGTGAACATCTATATGGAACGAGCGATAGTGAGGAAGTAGGTGATCGTGAAACTGAAGTGGGAGAAAAAGGAGTTGAGCCTGATTCCAAAAGGAGAAATACAGAAGTTGCGGTCTCAGATCCAATAGTTTCTTCACATAGGACAGTCACGGAGCCTAGAATCATCGTGCAAACGACTAGTGAAGTTGATCTCTTAGATGATGGTTATAGATGGCGAAAATATGGACAGAAAGTTGTCAAAGGCAACCCTTATCCTAGGAGCTATTACAAATGTACAACACCGGGTTGCAACGTTCGCAAGCATGTAGAGAGGGCTTCGACAGATCCTAAAGCAGTCATAACAACATACGAAGGAAAACATAATCATGATGTTCCTTCAGCTAAGACCAATAGCCATACTTTTGCCAACAAAAATGCTTCACAGATAAAATCACAAAATACCATTCCTGAGCAGCCTAGTTTTGGCAACATTGGTAGAGTCGGTGGCAATGAGCAACAACCTGTTGCACGGCTAAGGCTGAAGGAAGAACGGATAACTTAA 1284 0.4603 MDRLPWKEEEEAAVGGGKSGPPQRPNLSLPPRTDGLFSGGFSPGPMTLLSNILTDGDDGKSFSQLLAGAMVSPVAATSDALDSPDFFSHHHHQVSFGLSNHPAPAPAQAQAQAHVSFQGGQSNIDMYNQAEHSLSVSEPTDHAPLAEQRLQSSSLNVDKPADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSRQGHVTAIIYKGEHNHQPPNPNKQSKDTNGNADSSYQQMDPESSHVAGEHLYGTSDSEEVGDRETEVGEKGVEPDSKRRNTEVAVSDPIVSSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPSAKTNSHTFANKNASQIKSQNTIPEQPSFGNIGRVGGNEQQPVARLRLKEERIT 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05451 427 Gene3D WRKY domain 147 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g05451 427 Gene3D WRKY domain 298 374 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g05451 427 MobiDBLite consensus disorder prediction 387 401 - -
Vifa1g05451 427 ProSiteProfiles WRKY domain profile. 308 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g05451 427 MobiDBLite consensus disorder prediction 387 415 - -
Vifa1g05451 427 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 82 395 IPR044810 GO:0003700
Vifa1g05451 427 SUPERFAMILY WRKY DNA-binding domain 305 373 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g05451 427 SMART WRKY_cls 313 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g05451 427 SMART WRKY_cls 161 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g05451 427 ProSiteProfiles WRKY domain profile. 162 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g05451 427 FunFam WRKY transcription factor 33 300 366 - -
Vifa1g05451 427 SUPERFAMILY WRKY DNA-binding domain 159 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g05451 427 MobiDBLite consensus disorder prediction 1 36 - -
Vifa1g05451 427 MobiDBLite consensus disorder prediction 211 286 - -
Vifa1g05451 427 MobiDBLite consensus disorder prediction 218 243 - -
Vifa1g05451 427 Pfam WRKY DNA -binding domain 314 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g05451 427 Pfam WRKY DNA -binding domain 162 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g05451 427 MobiDBLite consensus disorder prediction 256 283 - -
Vifa1g05451 427 FunFam WRKY transcription factor 149 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05451 Vifa-Chr1 846305108 846306776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05451 7 427 WRKY Transcription Factor Family AT2G03340 47.458 1.90e-136 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g05451 WRKY 9.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05451 - - gmx:100127369 568.155