Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05435 ATGGTAAGACTTCATCTACCTCATTTTGATCAAGTCTGGTGTCCATTAGCCAACGGGTCTGAATGCATATCTTCAACTAATTTCGTAACACCCCGTCAGTTCTCCAACTATTTCGCGCCAAACAGTTCGAAGAAGCTGAAAATGACAATTGGGAATCTTGTTTCTGAGAATAAGAAAACAAGGAAGAAGAGGGAAATTGTCGATGAGAATGAGCCTTTGATACCTAAGTCTCAAGAAACGAATTCCGAGTTTCATGAATTTAATGGAGCTTCGTTTTCTGGGGCTGTTTTCAATTTGGCAACCACAACTATTGGTGCTGGAATCATGGGGTTGCCTGCTTGTGTTAAGAAATTGGGAATGGTGCCGGGTCTTATTGCCATAATCCTGACAGCATTGTTGACGGAGAAGTCGCTTGAGTTCATGATCAGGTTTTCAAGGGCGGGGAATCTTTCTGCCTATGGAAGTCTTATGGGGGATTCTTTTGGGAGATTTGGAAAAGCTTTGTTGGAGATATGTGTTGTGATCCATAACACTGGTTCTTTGATTGTCTACATGATTATTATCGGTGATGTGATTTCTGGAACAACTTCAAGTGGAATTCACCACGCTGGTATCCTTGAAGGATGGTTTGGTGTCCATTGGTGGACTGGGCGTACATTTGTTATTGTTTTTACAACACTTTTTGTGTTTGCACCTTTGGTTAGTCTTAAGCGAATTGATTCATTGAGATACACATCTGCATTGTCAATTGGGTTAGCTGTTGTTTTCCTTATCGTCGCCGTGGGGATCTCAATTATCAAGATTATTAGTGGTGGCATTGGAATGCCCAGACTCTTCCCGGTCATTACTGACGCAGCTTCAGTTTTTGATCTATTCACTGTAGTTCCTGTGCTGGTGACCGCTTACATCTGTCACTACAATGTTCACAGCATAGATAATGAACTGGAAGATTCCTCATGGATGCAGGGGGTTGTGCGTACTTCCCTTACTCTATGCTCTTCAGTGTACTTACTGACAAGCTTCTTTGCATTCCTTCTATTTGGTGACGAAACTCTCGATGACGTGCTTGCCAATTTTGATACTAATCTTGGAATTCCTCTTGGTTCGGTGCTCAATGACACTGTTCGATTTAGCTATGCTGCACATCTTGTGCTTGTATTTCCTGTAGTTTTCTATGGATTAAGGGTCAACGTAGATGGTCTGATATTTACCTCATCGAAAAGGCCTTTGGTTATTGATAACTTCAGATTTGCATCAATTACTATTTCCCTCGTTGGCATTATCTTCATGGGAGCAAACTTCATACCTAGCATTTGGGATATTTTCCAGTTCACTGGAGCAACTGCTGCTGTTTGTCTAGGATTCATATTTCCAGCTGCAGTCACTCTGAGGGATCGACACAACATAGCAACTAAAACAGACAAAATACTATCTGTTTTTATGCTAGTCCTGGCAGTCTTGTCAAATGCTATTGCTATATACAGTGATGCCCATGCCTTGATCAACAAAAATAAAAATGTCTGA 1524 0.4127 MVRLHLPHFDQVWCPLANGSECISSTNFVTPRQFSNYFAPNSSKKLKMTIGNLVSENKKTRKKREIVDENEPLIPKSQETNSEFHEFNGASFSGAVFNLATTTIGAGIMGLPACVKKLGMVPGLIAIILTALLTEKSLEFMIRFSRAGNLSAYGSLMGDSFGRFGKALLEICVVIHNTGSLIVYMIIIGDVISGTTSSGIHHAGILEGWFGVHWWTGRTFVIVFTTLFVFAPLVSLKRIDSLRYTSALSIGLAVVFLIVAVGISIIKIISGGIGMPRLFPVITDAASVFDLFTVVPVLVTAYICHYNVHSIDNELEDSSWMQGVVRTSLTLCSSVYLLTSFFAFLLFGDETLDDVLANFDTNLGIPLGSVLNDTVRFSYAAHLVLVFPVVFYGLRVNVDGLIFTSSKRPLVIDNFRFASITISLVGIIFMGANFIPSIWDIFQFTGATAAVCLGFIFPAAVTLRDRHNIATKTDKILSVFMLVLAVLSNAIAIYSDAHALINKNKNV 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05435 507 Pfam Transmembrane amino acid transporter protein 90 495 IPR013057 -
Vifa1g05435 507 PANTHER AMINO ACID TRANSPORTER 81 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05435 Vifa-Chr1 844110369 844116691 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05435 63 507 Amino Acid or Auxin Permease AAAP Family AT5G38820 63.982 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05435 K14207 - gmx:100791286 704.516