Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05434 ATGACAATTGGAAGTCTTGCACCTGAGGCAGAGAATATGAAAATAAGGAAGAAGAGAGAAGTTGGTGATGCGAATGCACCTTTGTTACCTAAGTCTCAAGAAACAGATGGCGAATTTCATGAATTTAATGGAGCTTCATTTTCTGGGGCTGTTTTCAATTTGTCCACCACAGTTATTGGTGCTGGGATCATGGGCTTGCCTGCTTGCGTCAAAAAGTTGGGGATGGTGCCCGGTCTTCTTGCCATAATCCTAACAGCATTATTGACTGGGAAGTCAATTGAGTTCATGATCAGGTTTTCAAGGGCCGGAAATCTTTCTTCCTATGGAAGTCTTATGGGGGATGCCTTTGGTAAATACGGAAAAGCACTGATAGAGACATGTGTTGTAATCGCTAACGTTGGTATTCTAATTGTTTACATGATTATTATTGGTGATGTGATTTCTGGAACTGCTTCAAGTGAAATTCACCATTCTGGTATCCTTGAAGGATGGTTTGGTGTTCATTGGTGGACTGGGCGTACATTTGTTCTTGTTTTCACAACACTTGCTGTGTTTGCACCTTTGGTCAGCCTTAAGCGAATTGATTCATTGAGATTCACATCTGCATTGTCAATTGGGTTAGCAGTTGTTTTCCTTATCATTGCTGTGGGGATCTCAATTTTCAAGATTATAAGTGGAGGCATTGGGATGCCAAGACTCTTCCCAATCATTACTGATGTAGCTTCGGTTTTTGATCTATTCACTGTAACCCCTGTGGTGATGTCAGCCTACATCTGTCACTACAATGTTCATAACATAGATAATGAACTGGAGGATTCTTCATGGATGCCTGGGGTTGTTCGTACTTCCCTTACACTGTGCTCTTCAGTCTACGTACTGACAAGCTTCTTTACGTTCCTTCTATTTGGGGAAGAAACTCTTGATGACGTGCTTGCCAATTTTGATGCTAATCTTGGAATTCCTTTTGGTTCTGTGCTCAATGACATTGTTCGTATTAGCTATGCTGCGCATCTTGTGCTTGTATTTCCTGTAGTTTTCTATGGATTAAGGGTCAACATTGCTGGTCTGATATTTCCCACGTCAAGAAGGTCTTTGGTTGCCGATAACTTCAGATTTTCATCAATTACGATTGGTCTTGTTGTCTCTATCTTCCTGGGAGCAAATTTCATACCTAGCATTTGGGATATTTTCCAGTTCACTGGAGCAACTGCTGCTGCTTGTGTAGGATTCATATGTCCAGCTGCAATCACTCTTAGGGATAAATACAACATAGCAACTAAAACAGACAGGATTCTGGCTATACTTATGATAATCCTTGCAGTCTTGTCAAATGCTGTGGCTATATACAGTGATGCCATTGCCTTGATCAAGAAGAATAAAACTTAA 1386 0.4091 MTIGSLAPEAENMKIRKKREVGDANAPLLPKSQETDGEFHEFNGASFSGAVFNLSTTVIGAGIMGLPACVKKLGMVPGLLAIILTALLTGKSIEFMIRFSRAGNLSSYGSLMGDAFGKYGKALIETCVVIANVGILIVYMIIIGDVISGTASSEIHHSGILEGWFGVHWWTGRTFVLVFTTLAVFAPLVSLKRIDSLRFTSALSIGLAVVFLIIAVGISIFKIISGGIGMPRLFPIITDVASVFDLFTVTPVVMSAYICHYNVHNIDNELEDSSWMPGVVRTSLTLCSSVYVLTSFFTFLLFGEETLDDVLANFDANLGIPFGSVLNDIVRISYAAHLVLVFPVVFYGLRVNIAGLIFPTSRRSLVADNFRFSSITIGLVVSIFLGANFIPSIWDIFQFTGATAAACVGFICPAAITLRDKYNIATKTDRILAILMIILAVLSNAVAIYSDAIALIKKNKT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05434 461 PANTHER AMINO ACID TRANSPORTER 40 443 - -
Vifa1g05434 461 Pfam Transmembrane amino acid transporter protein 45 451 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05434 Vifa-Chr1 844029183 844031322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05434 11 459 Amino Acid or Auxin Permease AAAP Family AT5G38820 62.222 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05434 K14207 - gmx:100791286 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05434 1 844029183 844031322 Vifa1g05434 1 844029183 844031322 ECH
Vifa1g00439 1 68485050 68487192 Vifa1g05434 1 844029183 844031322 PCT