Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05426 ATGTCTCGTTATCGTTCTTTGAATCCCTTCGCAACAACTCACTCGGATTCCGGTTCCGATTCCGATTCCGACGTTGACTCACTGAGTCAATTCGTCACCGATCTCTTCGAAAATCGTTCCCCCGCCGATCCGGTTTGTCCCTGGGATGACAACGATGATGAGGATGATGATGAAAGAGACATAAACCCGTTCTCCGATTTTGCTTGCGATCGAGATGAACCAGAATTAGAATTAGGGTTAGATTTAGGGTTTGGAGATGAAATTGAAACTCGGTATAACGATAATTACGATGATGTTTTTGGTTTTTCAGTGAGTGGTGGTAATTCCACTCGGGTTAGGGTTATTGGATTTGGTTCTGATTCGGAATCGAGTGGGCACGATGAAGAATTTGGTTATGAGGGAAGAAACGATGAGGATGGTGATGAGAGGGTTAGTGGATTGTTTTGGGATAGTCTTTGTTTGGAGGATCATAGGAGTATTTTGAATGATTGGGAGGAAGTGGTTGAGGAGAGGGTGAATGAGGTTGAAGATTCTTCTGGTATGTTGATTGGTGAGGTTGAGGTTGAGGTTGAGGTTGATGATCGATCAGTGACGTCTGGGTTCGAGGAGGAAATAGAGGAGGAACAAGGGGAAGAGGCGCTGCGGTATTTGGAATGGGAGATTCTATTGGCTTTTAACAATTTAGAGAGGAGTGGTGGATTGGAACACGACGACGAGAATATTAATAATTTGTATTTAGCTGTTCAGGAAGGTTTTATTTCGGGAAATGCTGATTATGATATTCTTTTCAGTCAGTTATTGGAGAACGAGAGTGGTTTGAAGGGTAGTCCACCGGCGGCGAAGAGTTTTGTGGAGAATCTCCCTTTGGTGAAATTGACCGAGGAGGAGTTGGAAAAGAAGGATGTTATGTGTGCCATTTGTAAAGATGAGGTGATGGCGGGAGAGAAGGTGAGGAAGCTACCTTGCTCACATTGTTACCACGGAGATTGTATTTTGCCGTGGTTGAATATTCGCAACACGTGTCCTGTTTGTCGGTTCGAGTTGCCTACTGATGATGCTGATTACGAGCAAAATAAGGTTCAAAGAATTGCCCGTGATCTGTTGGATTTTGCAGGATAG 1119 0.4406 MSRYRSLNPFATTHSDSGSDSDSDVDSLSQFVTDLFENRSPADPVCPWDDNDDEDDDERDINPFSDFACDRDEPELELGLDLGFGDEIETRYNDNYDDVFGFSVSGGNSTRVRVIGFGSDSESSGHDEEFGYEGRNDEDGDERVSGLFWDSLCLEDHRSILNDWEEVVEERVNEVEDSSGMLIGEVEVEVEVDDRSVTSGFEEEIEEEQGEEALRYLEWEILLAFNNLERSGGLEHDDENINNLYLAVQEGFISGNADYDILFSQLLENESGLKGSPPAAKSFVENLPLVKLTEEELEKKDVMCAICKDEVMAGEKVRKLPCSHCYHGDCILPWLNIRNTCPVCRFELPTDDADYEQNKVQRIARDLLDFAG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05426 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 196 349 - -
Vifa1g05426 372 MobiDBLite consensus disorder prediction 1 36 - -
Vifa1g05426 372 MobiDBLite consensus disorder prediction 47 61 - -
Vifa1g05426 372 MobiDBLite consensus disorder prediction 1 65 - -
Vifa1g05426 372 SMART ring_2 304 344 IPR001841 -
Vifa1g05426 372 Pfam Ring finger domain 303 345 IPR001841 -
Vifa1g05426 372 MobiDBLite consensus disorder prediction 122 138 - -
Vifa1g05426 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 351 IPR013083 -
Vifa1g05426 372 SUPERFAMILY RING/U-box 290 351 - -
Vifa1g05426 372 FunFam E3 ubiquitin-protein ligase RING1-like 265 351 - -
Vifa1g05426 372 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Vifa1g05426 372 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05426 Vifa-Chr1 842211216 842212334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05426 219 368 C3H Transcription Factor Family AT3G02340 47.273 1.73e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05426 - - gmx:100812037 333.954