Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05422 ATGTTCCATTCTCACCGTCTCAAAGCTGTTGTCTACCTCAACCATCTTTCTTCAACTCCAAAATCTCACCACCTTCTTCACTCTCTCAATCCCTTCTCCACCACTTCAGATTCCTTCACCCTATCCTACTTCACCAACAACTGTGGCTTATCTCCACAAGACGCTCTCAAAGCCTCAAAACGACTCCGTCTCACTTTCACCACACCCGAAAAACCCAACTCCGTTATCGCCTTCTTCAAAACCCATGGTTTCTCCATTCCCCAAATCCAATCCATCATTCTCAAGAACCCCCAACTCATCCTCTCCAACCCCACCAAAACCATTCTCCCTAAGTTTCAATTTTTAGCCTCCAAAGGCGCTTCTCCCTCCGACATAGTCGCCGCCGTCACCAGAAGCTCTCGTTTCCTCCGTGTAAGCCTCGAGAAACATATTATCCCTGCTTTTCAGTTGGTGGCATTGGCAACAGCAGCAAAAGCAAAATTACTTCTTCGTGAGCTAAAAACCGTTAAAGCGGATTTAGCATTTGCTAAAGCGCGCTGTGCTCAACTTGAAGAAGAAAATAAATTACTCAGGGAACGAGAAGGAAGCGATAAGGGACTTATCCGTGATGATGATGATCTGGTTGGTTTGGAAAACTCCTTCATTACAAATATTCGACATTGTATTAACATCACACAATCCAATGTTGATTCAGATTATGATGCTAAACCCAGCTTTACACAGATCTTGGTAATCTCATCTATTGGGTTGATATTTTTCATAGCATTGCGTTATCATCTCAAAAAGATTCGAGATCAAAAGATCATTCCGCGTTTAAGATTATCGCGTGCAGGTCACCCCCCAAAGCTTGAAAGATTCTCTCATTACGTATCTAGGCAAATGGGGTTCAAGGATAGGAGAATCGGTCCTGATATATGTAGATTGGCTTCTGAATACATAAGCAAATATGAAGGGTTTGAAGATGATATATATGCCTATTTTGAGAATGAACCAGATGCTGATTCACTTTATGTCAAGTTGGTGGAAGAGTTTGAGAGATGCATTCTTAGTTACTTTGGATTTCATTGGAACCATTGTGACATATTGATAAGTCAGGTTTTGAGCTCGGACATTTCTGAGCCAAAAAAGAAGCTAAAGAACATAGTTATGGCTGCTACTAGGGATCAAAGGTTCGAGAGAGTTGCCAAGAGTCTGAAGGTGGCTAGTGTTTTTAATACATTAGTGGAAGAGATGAAAGCGATGGGTATTGCAGTAAACGATGACTCTCAATGTACTCACAGTGATAGGAGCCCGGTCCTTCTTCTAATGGGGGGAGGTATGGGAGCTGGCAAGAGCACTGTACTCAAGGATATTCTCAAAGAACCTTTCTGGGCAGGAGCATCAGGAAATGCCGTAGTCATTGAAGCAGATGCCTTCAAAGAATCAGATGTCATCTACAGGGCACTTCGCTCAACAGGTCATCATGACATGATTCGAACAGCCAAATTGGCGGAAAGAAAAAACACAGCTTTTGTAGATGTGTCTCCAGAAGAAACTGTGCAGAAGAATGCTTTTGAAAGATTTAAAGATGTTGATGAATCAAGTTCATTCAAGGAAGCCCGTGCTCTAGCTGAAGCTTCTCAAAATGGAGCTCCTTTTAACCAAGGATGGATGTTTCAGTTCAGATTCAGATATATTTCTCTTTGGTGCGAGGTCTCACTGATTCTGGCAGCTTCAAAAGGTAATCTTTTAAATTGTGATGGCCTTGTTTCTTTCTCTAATCTTCTCCTTCTTCTTTCTTTTTGA 1785 0.4196 MFHSHRLKAVVYLNHLSSTPKSHHLLHSLNPFSTTSDSFTLSYFTNNCGLSPQDALKASKRLRLTFTTPEKPNSVIAFFKTHGFSIPQIQSIILKNPQLILSNPTKTILPKFQFLASKGASPSDIVAAVTRSSRFLRVSLEKHIIPAFQLVALATAAKAKLLLRELKTVKADLAFAKARCAQLEEENKLLREREGSDKGLIRDDDDLVGLENSFITNIRHCINITQSNVDSDYDAKPSFTQILVISSIGLIFFIALRYHLKKIRDQKIIPRLRLSRAGHPPKLERFSHYVSRQMGFKDRRIGPDICRLASEYISKYEGFEDDIYAYFENEPDADSLYVKLVEEFERCILSYFGFHWNHCDILISQVLSSDISEPKKKLKNIVMAATRDQRFERVAKSLKVASVFNTLVEEMKAMGIAVNDDSQCTHSDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGASGNAVVIEADAFKESDVIYRALRSTGHHDMIRTAKLAERKNTAFVDVSPEETVQKNAFERFKDVDESSSFKEARALAEASQNGAPFNQGWMFQFRFRYISLWCEVSLILAASKGNLLNCDGLVSFSNLLLLLSF 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05422 594 Gene3D - 416 546 IPR027417 -
Vifa1g05422 594 Coils Coil 159 193 - -
Vifa1g05422 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 527 IPR027417 -
Vifa1g05422 594 PANTHER UNCHARACTERIZED 231 499 IPR044802 -
Vifa1g05422 594 Pfam mTERF 77 152 IPR003690 GO:0003690|GO:0006355
Vifa1g05422 594 SMART mt_12 126 158 IPR003690 GO:0003690|GO:0006355
Vifa1g05422 594 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Vifa1g05422 594 Gene3D Transcription termination factor 3, mitochondrial 47 198 IPR038538 -
Vifa1g05422 594 Pfam Zeta toxin 420 486 IPR010488 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05422 Vifa-Chr1 841966487 841969999 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g05422 Zeta_toxin 6.4e-10 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05422 - - gmx:100794775 420.239