Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05421 ATGCAAACAAGAGAAGTAACAACAACCGGACTCAATTACATGATTCCATCAAACACATCACCATATCTTCAAACCTTCAACAACATTAACCCAACATTCCATCTTCAAAAACTCTCAAACCAATTATTGAATTACCAAAACACCCCTCAATTTCATCATGACTTCAATTATAGTCCTCAATCCTCATGCATAAGTAGCAACTCAACTTCTGATGAAGCCGATGAACAAAACCTAAGCCTCATCAACGAGAGGAAACATCGAAGGATGATATCAAACCGCGAATCGGCTCGTCGATCGCGTATGAGGAAGCAGAAACACCTTGATGAACTTTGGTCACAAGTTCTTTGGCTAAGAAATGAAAATCATCAACTTATAGAGAAACTCAACCATGTTTCCGAGAATCATGATCATGTTGTTCAAGAGAATTCTCAGCTCAAAGAAGAAGCTTTGGAGCTTCGACAAATGATAAGAGACATGCAGATTCATAGTCCTTTGATTCCTTCTTTTAGTCCTTTGGAAGATACTTATCTTAGAGATGATTCTTCAAACAATTCCATCTAA 561 0.3761 MQTREVTTTGLNYMIPSNTSPYLQTFNNINPTFHLQKLSNQLLNYQNTPQFHHDFNYSPQSSCISSNSTSDEADEQNLSLINERKHRRMISNRESARRSRMRKQKHLDELWSQVLWLRNENHQLIEKLNHVSENHDHVVQENSQLKEEALELRQMIRDMQIHSPLIPSFSPLEDTYLRDDSSNNSI 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05421 186 Coils Coil 128 162 - -
Vifa1g05421 186 Gene3D - 82 137 - -
Vifa1g05421 186 SMART brlzneu 80 144 IPR004827 GO:0003700|GO:0006355
Vifa1g05421 186 CDD bZIP_plant_GBF1 85 136 IPR045314 GO:0003700|GO:0006355
Vifa1g05421 186 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 87 102 IPR004827 GO:0003700|GO:0006355
Vifa1g05421 186 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 82 145 IPR004827 GO:0003700|GO:0006355
Vifa1g05421 186 SUPERFAMILY Leucine zipper domain 84 134 IPR046347 GO:0003700|GO:0006355
Vifa1g05421 186 FunFam BZIP transcription factor 82 133 - -
Vifa1g05421 186 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 15 165 IPR044521 -
Vifa1g05421 186 Pfam bZIP transcription factor 84 134 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05421 Vifa-Chr1 841883754 841884314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05421 59 165 bZIP Transcription Factor Family AT3G30530 73.636 7.16e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g05421 bZIP_1 3.9e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05421 - - gmx:100791105 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05421 1 841883754 841884314 Vifa1g05421 1 841883754 841884314 ECH
Vifa1g00449 1 72056438 72056773 Vifa1g05421 1 841883754 841884314 PCT