Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05408 ATGGAAGTTTCAAGAGGAGAATATTTTGTATGTTTTGTGACATTGTTGTTGTTTTTGTGTTCTACAAATGCTTTGCTTTCTCCTAAGGGAATTAACTTTGAAGTTCAAGCTTTGATGAGTATAAAAGCTTCATTAATGGATCCTCATGGAATTCTAGAGAATTGGGATGGTGATGCTGTTGATCCATGTAGTTGGAATATGGTTACTTGTTCAACTGAGAATCTTGTTGTTAGTTTGGGAATTCCTAGTCAGAATTTATCTGGTACATTATCACCAAGCATTGGAAACTTGACCAATCTTCAAACTATTGTGTTACAGAATAACAATATAACTGGACCAATCACTTCAGAGCTAGGAAAACTTTCCATGCTTCAAACACTTGATCTCTCTGATAATTTCTTCAATGGAAGAATTCCTCCTTCTCTTGGTCATCTGAGAAAGCTTCAATACTTGAGGCTAAATAATAACAGCTTTTCTGGTGAATGTCCTGAGTCACTGGCTAACATGGCACAACTTACTTTTCTTGATTTGTCATTCAACAATCTTAGTGGCAGTGTGCCTAGAATCTTGGCCAAATCATTCAGTATTGTTGGAAACCCTCTGGTCTGTGCTACAGAAAAAGAAACAAACTGCCATGGGATGAAACTCATGCCTATGTCAATGAACTTAAACAATACTAACCATGTATTACCATCAAGCAAAACAAAAGCTCACAAAAAGGTCATTGCCTTTGGTTTGAGTCTTGGATGCCTTTGCTTGTTAGTCCTTGGTTTTGGATTTGTACTATGGAGGAGACACATGCATAATCAACAAGCATTCTTTGATGTTAAAGACCGACATCACGAAGAAGTCTACCTAGGAAACTTGAAGAGGTTCCAATTAAGAGAACTACAGATTGCTACTCACAACTTCAGCAACAAAAACATATTAGGAAAAGGAGGTTTCGGCATTGTCTACAAAGGAATTCTTTCGGATGGTACACTTGTTGCTGTAAAGAGGCTTAAAGACGGAAATGCCAAGGGAGGAGAGATACAATTTCAGACCGAAGTTGAAATGATCAGCTTAGCAGTTCATCGAAACCTTCTCAAACTCTATGGATTTTGTATGACTTCATCAGAAAGGCTTTTAGTTTATCCTTACATGTCCAATGGCAGCGTCGCTTCTCGTCTCAAAGCTAAACCAGTGTTGGATTGGGGGACAAGGAAGCAAATTGCATTAGGAGCAGCAAGAGGACTATTATACCTACATGAACAATGTGATCCAAAGATAATCCATAGAGATGTGAAAGCCGCAAATATATTACTTGATGATTATTGTGAAGCAGTAGTTGGTGATTTTGGTTTGGCAAAGCTTTTAGACCACAAAGATTCACATGTAACAACTGCAGTTAGGGGCACAGTAGGACATATTGCACCCGAGTATCTTTCCACAGGACAGTCTTCTGAAAAGACTGATGTTTTTGGATTTGGCATTTTGCTTCTTGAACTGATTACAGGTTTGAGGGCCCTTGAATTTGGAAAGGCTGCCAACCAAAAAGGAGCCATGCTGGATTGGGTAAAGAAAATTCATCAAGAGAAGAAGCTAGATTTGCTTGTAGACAAAGATCTCAAGAACAACTATGACAAGATTGAGCTTGAGGAAATAGTTCAAGTTGCACTTTTGTGCACACAATATCTTCCAAGTCACAGACCGAAAATGTCCGAAGTCGTACGCATGCTCGAAGGCGACGGTCTAGCCGAGAAATGGGAAGCTTCTCAAAGAGCTGACAACACTAACAAGTTCAAACCACATGAATTATCTTTGTCAGATCGATTTTCCGATCTTACTAATGATTCTTCTTTGTTAATCCAAGCCATGGAGCTTTCAGGTCCAAGGTGA 1878 0.3898 MEVSRGEYFVCFVTLLLFLCSTNALLSPKGINFEVQALMSIKASLMDPHGILENWDGDAVDPCSWNMVTCSTENLVVSLGIPSQNLSGTLSPSIGNLTNLQTIVLQNNNITGPITSELGKLSMLQTLDLSDNFFNGRIPPSLGHLRKLQYLRLNNNSFSGECPESLANMAQLTFLDLSFNNLSGSVPRILAKSFSIVGNPLVCATEKETNCHGMKLMPMSMNLNNTNHVLPSSKTKAHKKVIAFGLSLGCLCLLVLGFGFVLWRRHMHNQQAFFDVKDRHHEEVYLGNLKRFQLRELQIATHNFSNKNILGKGGFGIVYKGILSDGTLVAVKRLKDGNAKGGEIQFQTEVEMISLAVHRNLLKLYGFCMTSSERLLVYPYMSNGSVASRLKAKPVLDWGTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHKDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGAMLDWVKKIHQEKKLDLLVDKDLKNNYDKIELEEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRADNTNKFKPHELSLSDRFSDLTNDSSLLIQAMELSGPR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05408 625 FunFam Somatic embryogenesis receptor-like kinase 1 381 593 - -
Vifa1g05408 625 Pfam Leucine rich repeat 124 182 IPR001611 GO:0005515
Vifa1g05408 625 Gene3D Transferase(Phosphotransferase) domain 1 381 593 - -
Vifa1g05408 625 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 213 - -
Vifa1g05408 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Vifa1g05408 625 SMART serkin_6 304 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05408 625 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vifa1g05408 625 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Vifa1g05408 625 ProSiteProfiles Protein kinase domain profile. 304 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05408 625 Pfam Protein kinase domain 305 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05408 625 SUPERFAMILY L domain-like 34 230 - -
Vifa1g05408 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 584 - -
Vifa1g05408 625 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Vifa1g05408 625 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Vifa1g05408 625 SUPERFAMILY Protein kinase-like (PK-like) 281 574 IPR011009 -
Vifa1g05408 625 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05408 Vifa-Chr1 839875520 839879703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05408 1 625 Receptor kinase-like Gene Family AT5G16000 74.684 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vifa1g05408 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05408 - - gmx:100806650 1057.74