Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05403 ATGGAACAACCAACACAACAAGACTCAACTAAAAAAACTACCTTTATTACAAATCATGAAACCAACTCTCATCAACATCATCATCATCACCATCATCATCATCACCATCATCACTTCTATCAACAACATCAACAACTATATCATCAGAATCAGTTTCAACACTACTCAACTCAACTTGGTTTCTTCAACAACACTGCTCTTCTTCCTTTACCTTCTCTTCAACAACTGCCTTCGATTCCTTCTTTTCCTCAAAATCAATCCATCAAATTAAGAACCCATTTGCAGAAACTTCCATGCAAACTCAATACTTCTCCTTCATCAGATTACAATCTTTCTCAACTTTCACTTGCTCCTTCTACAAAGGAAATTCATAAGCAAAATAAATCAACTTTTAAAGAAGATGATGGGAAAAAGCTCATTTCAACAAGGAGGGCACAAGAAGTGATTGTTGCAAGGAGGCCTGACTCAGGTGGACAAGAAGGTCCTGTGATTTCTCTCCTTGCAAACCATTTTTTGGTGAAGTTTGATTCATCACAAAAAATATATCATTACAATGTTGAAATTACTCCTCATCCCTCCAAGGATGTTGCTAGAGAAATTAAGCATAAGTTGGTAAATAGCAATTCGGAGATTTTGTCGGGTGCTCTTCCGGCGTATGATGGGAGGAAGAATCTTTATAGTCCAATTGAATTCCAAAATGATAAGCTTGAGTTCTACATAAGCCTTCCAATCCCTTCTAGTAAATCGTCGTCGCCTTATGGAGAAATGAATGATATCAACGAGAAGCGTGAACAACATAAACTATTCCGGATAAATATCAAACTAGTCTCGAAGATTGGCGGGAAAGAGTTGACTAAGTACTTGAGCAGAGAAGGCGATGACGGGATTCCACTTCCACAGCATTATCTACATGCATTGGATGTGATTTTGAGGGAAAGTCCTACTGAGAAATGTATACCAGTTGGAAGGTCATTCTTTTCGAGTTCAATGGGGAGAGGCAAAGATATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTTAGACCGACGCAACAAGGACTTGCTCTCAATGTTGATTTCTCAGTAACCGCTTTCCATGAGAGTATAGGAGTTATTCCGTATTTACAGAAACGTCTCGAGTTTTTCAGAGACCTTTCTCAAAGGAATGCAATTGAGTTAACTTGTGAAGAAAGGAAGGAAGTGGAGAAAGCATTGAAGAATATCAGAGTCTTTGTTTGCCATAGAGAAACTGTTCAGAGATACCGTGTCTATGGTTTAACCGAAGAGGCAACTGAAAATCTATGGTTTCCTGATAGAGATGGAACGAATTTGAGGCTTATGAGTTACTTTAAAGATCACTATAACTATGACATACAATTCAGGAAGTTACCATGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTGCCTATGGAGCTTTGTGTGATTTGTGAAGGACAGAAGTTCCTTGGAAAACTGTCGGATGATCAGACGGCAAAAATACTCAAGATGGGCTGTCAAAGACCAGGAGAACGAAAAGCCATCATCGAAGGCGTCATGAGAGGAAATGCCGGTCCTACGAGTGGTGACCAGGAAAAGGAATTCAAACTCCAAGTCTCAAGAGAAATGACGAGGTTGACCGGTAGAATTCTCTACCCTCCCAAACTAAAGCTCGGAGATGGAGGTCAAGTGAGAAACTTGACTCCTTCACGTCATGATCGCCAATGGAACTTTCTTGACGGCCATGTTTTTGAAGGAACTACAATTGAAAGATGGGCGCTAATAAGTTTTGGAGGCACACCTGAGCAAAAATCCTATATCCCGAGATTCATAAACCAGTTAACTCAAAGATGTGAACAATTAGGCATTTTTCTTAACAAGAACACGGTTATAAGTCCACAGTTTGAATCAAGTCACATTCTTAACAATGTCGCACTTTTGGAATCTAAGCTCAATAGAATCCAAAGGGTTGCCTCAAACAATCTGCAGCTTCTTATTTGTATAATGGAGAAAAAACACAAAGGCTATGGAGACTTGAAACGAATTGCCGAGACAAGTGTTGGTGTTGTAAGCCAATGCTGTCTGTATCCGAATCTTGTCAAGTTAAGTTCACAGTTTTTGGCTAATTTGGCTCTCAAGATCAATGCTAAAGTCGGTGGATGCACAGTTGCTTTGTACAACTCGCTTCCTTCTCAGTTACCGCGTCTTTTTAGCATCAACGAGCCGGTGATGTTCATGGGAGCTGATGTAACACATCCTCATCCTCTTGATGATTCGAGTCCATCTGTTGCTGCTGTTGTTGGTAGCATGAACTGGCCAACAGCCAACAAATACATTTCAAGAATAAGATCTCAAACACATAGACAAGAAATCATCGCGGATCTCGGCGCAATGGTTGGAGAATTGCTTGACGATTTTTATCAGGAAGTTGAAAAACTCCCCAGCCGAATAATTTTCTTTAGAGACGGTGTTAGTGAAACTCAATTCCACAAAGTTCTCGACGAGGAACTACAATCCATAAAACAAGCGTGTTCATCAAGGTTTCATGGTTACAAACCTTTTATTACTTTCGTAGTTGTGCAAAAGAGACATCACACAAGGTTGTTTCCTGACGAAGCCGATCAATCTTCAATACACAACAATTTTCATTCTCAATACGAAAATATTCCTCCGGGGACCGTGGTTGATTCCGTGATCACTCATCCAAAGGAATTCGATTTTTATCTGTGTAGCCATTGGGGTGTGAAGGGAACAAGTAGGCCAACTCATTATCATGTCTTGTGGGACGAAAACGAGTTTACTTCAGATGAACTTCAGAAGCTGGTTTACAATTTGTGCTTTACATTTGTTAGGTGTACTAAGCCAATTTCATTGGTTCCTCCTGCATATTATGCACATTTAGCTGCATATAGAGGGAGACTCTACCTTGAGAGATCTGAGTCATTAGGTTTATTCAGAAGCACCTCTACATTATCAAGAGCTGCTCCTCCAAAGACACCACCTCTACCTAAACTTAGTGAAAACATCAAGAAGCTTATGTTTTACTGCTAG 3060 0.4007 MEQPTQQDSTKKTTFITNHETNSHQHHHHHHHHHHHHHFYQQHQQLYHQNQFQHYSTQLGFFNNTALLPLPSLQQLPSIPSFPQNQSIKLRTHLQKLPCKLNTSPSSDYNLSQLSLAPSTKEIHKQNKSTFKEDDGKKLISTRRAQEVIVARRPDSGGQEGPVISLLANHFLVKFDSSQKIYHYNVEITPHPSKDVAREIKHKLVNSNSEILSGALPAYDGRKNLYSPIEFQNDKLEFYISLPIPSSKSSSPYGEMNDINEKREQHKLFRINIKLVSKIGGKELTKYLSREGDDGIPLPQHYLHALDVILRESPTEKCIPVGRSFFSSSMGRGKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFFRDLSQRNAIELTCEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEEATENLWFPDRDGTNLRLMSYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPGERKAIIEGVMRGNAGPTSGDQEKEFKLQVSREMTRLTGRILYPPKLKLGDGGQVRNLTPSRHDRQWNFLDGHVFEGTTIERWALISFGGTPEQKSYIPRFINQLTQRCEQLGIFLNKNTVISPQFESSHILNNVALLESKLNRIQRVASNNLQLLICIMEKKHKGYGDLKRIAETSVGVVSQCCLYPNLVKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFSINEPVMFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIADLGAMVGELLDDFYQEVEKLPSRIIFFRDGVSETQFHKVLDEELQSIKQACSSRFHGYKPFITFVVVQKRHHTRLFPDEADQSSIHNNFHSQYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENEFTSDELQKLVYNLCFTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRSTSTLSRAAPPKTPPLPKLSENIKKLMFYC 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05403 1019 SMART Piwi_a_2 667 980 IPR003165 GO:0003676
Vifa1g05403 1019 ProSiteProfiles PAZ domain profile. 379 488 IPR003100 GO:0005515
Vifa1g05403 1019 SMART PAZ_2_a_3 379 519 IPR003100 GO:0005515
Vifa1g05403 1019 MobiDBLite consensus disorder prediction 20 45 - -
Vifa1g05403 1019 Pfam PAZ domain 383 504 IPR003100 GO:0005515
Vifa1g05403 1019 SUPERFAMILY PAZ domain 366 524 IPR036085 GO:0005515
Vifa1g05403 1019 CDD PAZ_argonaute_like 375 487 - -
Vifa1g05403 1019 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 143 982 - -
Vifa1g05403 1019 Gene3D - 739 1019 IPR036397 GO:0003676
Vifa1g05403 1019 MobiDBLite consensus disorder prediction 23 42 - -
Vifa1g05403 1019 FunFam Argonaute 10 553 729 - -
Vifa1g05403 1019 Pfam N-terminal domain of argonaute 164 310 IPR032474 -
Vifa1g05403 1019 Pfam Argonaute linker 1 domain 320 369 IPR014811 -
Vifa1g05403 1019 SUPERFAMILY Ribonuclease H-like 651 980 IPR012337 -
Vifa1g05403 1019 Gene3D paz domain 365 492 - -
Vifa1g05403 1019 Gene3D - 553 729 - -
Vifa1g05403 1019 ProSiteProfiles Piwi domain profile. 667 980 IPR003165 GO:0003676
Vifa1g05403 1019 CDD Piwi_ago-like 536 979 IPR045246 -
Vifa1g05403 1019 SMART DUF1785_2 319 371 IPR014811 -
Vifa1g05403 1019 FunFam protein argonaute 10-like 738 1019 - -
Vifa1g05403 1019 FunFam Protein argonaute 7 366 492 - -
Vifa1g05403 1019 Pfam Piwi domain 668 977 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05403 Vifa-Chr1 837602449 837606373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05403 158 1019 Eukaryotic Initiation Factors Gene Family AT1G48410 41.871 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05403 K11593 - gmx:100797755 1648.25