Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05390 ATGAGAACGAGACCATGCTGTAGGAGTGTAATAGGGTTGAAGAAAGGACCATGGACACCAAACGAAGACAAGAAGCTTATAGCATATGTTACTCAAAATGGCCATGAAAACTGGCATTCTTTGCCCGCTAGAGCAGGTCTTCAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGATAAACTATTTGAGTCCTTATATAAAACGAGGAAACTTTAGTTTGGAGGAAGATCAAACTATTATTCAAGTGCATGCTCTTATCGGAAACAAATGGTCCACAATAGCAGCTCTCCTACCAAGCAGAACAGACAATGAGATAAAGAATCATTGGAACACTAACATCAAGAAAAGACTTATCAATATGGGCATTGATCCTATTACTCATAAACCAATATCCAACAACAAAGACAAGGACAATATTGCTATAAAACACATGACTCAATGGGAGAATGTTAGATTGGAAGCTGAAGCAAGATCATCATCAACGTTAGGCAAAACTCAAATTGAATCTTTACCGTGTTCATCAAGTGTGTCAAATGTGTTAATAACCACTAACAACAATGCAGTGTATAGCAATATGTGTGCCATTATGCTTGCAAATGAGGATGACCCTTTTTCTCCAACATCCATATCGAGCTTTCCTAGTTGGGACCTTCTTACTGCTGCAAATGATTTGAATTTCAGAGAAGGCTTACTATCGTTTGAGGCTGATAGTATTAATAATAACAATAATAATAATAATATGGAAACTAATGACCAAGAGATCAGGAATGGCTATGGCTTTAACTTGCAAGATGATGATGATATAATGGTTGCATTGGAAGCATTTAGAGATGGAAATGGAAAATACAATTTGGATGCTAGCTTTGCACTTTTTGAATAA 879 0.3652 MRTRPCCRSVIGLKKGPWTPNEDKKLIAYVTQNGHENWHSLPARAGLQRCGKSCRLRWINYLSPYIKRGNFSLEEDQTIIQVHALIGNKWSTIAALLPSRTDNEIKNHWNTNIKKRLINMGIDPITHKPISNNKDKDNIAIKHMTQWENVRLEAEARSSSTLGKTQIESLPCSSSVSNVLITTNNNAVYSNMCAIMLANEDDPFSPTSISSFPSWDLLTAANDLNFREGLLSFEADSINNNNNNNNMETNDQEIRNGYGFNLQDDDDIMVALEAFRDGNGKYNLDASFALFE 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05390 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 62 IPR017930 -
Vifa1g05390 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vifa1g05390 292 Gene3D - 14 67 - -
Vifa1g05390 292 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa1g05390 292 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vifa1g05390 292 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vifa1g05390 292 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Vifa1g05390 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 241 - -
Vifa1g05390 292 FunFam MYB-related transcription factor 14 67 - -
Vifa1g05390 292 SMART sant 67 115 IPR001005 -
Vifa1g05390 292 SMART sant 14 64 IPR001005 -
Vifa1g05390 292 FunFam MYB transcription factor 69 130 - -
Vifa1g05390 292 Gene3D - 70 117 - -
Vifa1g05390 292 CDD SANT 70 113 IPR001005 -
Vifa1g05390 292 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vifa1g05390 292 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05390 Vifa-Chr1 835774916 835776132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05390 1 157 MYB Transcription Factor Family AT3G01140 63.190 1.79e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g05390 Myb_DNA-binding 6.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05390 K09422 - gmx:100792464 279.641