Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05384 ATGGAAAATGAAGAACCAGTTCTTCCTCAATCTCACGGTTGTAACATTCAAGGTATGGATCGGGTGGTGGTAACAATTACTGGTTACCATGAACCAGATAGATTCAACCTTATTAAGCTGATTTCGTATGCCGGTGCTAATTACGTTGGAATGATGTCAAAATCAATAACGCATCTGGTGTGTTGGAAGTTTGAAGGAAAGAAATATGATATTGCTCGAAAATTTAGAATACCTATAGTCAACCACCGTTGGGTTGAAGACTGCATAAAGGAAGGAAGGCGTGTCCCGGAAGATTCTTATACCATGCAAAGTGGACATGAAGTAGGGCCATTGTTAATGGAAGTTCCTGTCACTGTTCAAGCAAATAGCTTGTCAAAGAAAAAAGTGGTTAGTGGCAGTTTATGTGATATTCGATCTGAAGGGCAAAATAGCGACCTCAGTTCTTGGCTCTGTGGAATTTCTGTTTTGGAAGATTCTTCTTTATTGAGAAAGCATGAGGAGTCAAGTTCATATTCATCTAGACGGTCAAAGAAAGGTAAAAGAAATAGTGAGAATGAAGTAAGTACTGAAGCAAGACATTCTCGTAAAGGAAGAAAGGTTGTGAAAAATGCTGGTAGTGTGGCGTTAGACCCTATAATTTTGGATTTAAGTACAGACGACCAGCTTATCGAAATGGATAGGCTACACACTGAAGCTGCAGCTACTTCTACCATTTCTAGCCGTGTCAATATTGGCAATATTCAAGAAAATAGTGAAGGACTTGATATTGGACTATCTAGACAAAGTAGAACTATCGATGGAAGTTCAAATGGCATTGAGCAGAGTAGAGATTCATATAATTTATCTACTCCCACAAATTCAACTTCGTTTGTTGAAGATCCCCTTCCTTTGACACAAACTTCAGTAGACTTATGTTCCAGTGCTGCGGAAAAGTCCACTGGTGGTGACATGGTTGATAATTTTGATGACTTACCTACTACAAAGGACTTGTCATGTGTTATATGTTTCACAGATTTCAGTTCAACAAGGGGGATTTTAGCCTGTGGACATCGGTTTTGTTTTCCATGCATCCAGGGTTGGGTTGATCACAGAATTGCAATGGGAAAAATTTCAACCTGTCCTTTGTGCAAGGCAAGTATTACAGGGATCATGAAAGTTGAGCATGCAGCCACCACTGATCAAAAAGTTTACTCCCAGACAATTCCATGTGACTACCCAGGCTCAGATATTTTTATCCCCATGGATCACGAATTTCGAAACAATAGCATAGAGTCCTCCCGTGCAGGTGCTTGTGTAATTTGCAGTGGTCGAGAACCTGAGGATCTACTTCACAATTGTGATGTTTGTGGAAGTCGAAGAATTCATTCCTATTGCATGGACCCTCCTTTACTGCCTTGGACATGCAGTCCCTGCAAGGAACTTCGAATGATTTATCGTAACCGTTCATATTAG 1452 0.4029 MENEEPVLPQSHGCNIQGMDRVVVTITGYHEPDRFNLIKLISYAGANYVGMMSKSITHLVCWKFEGKKYDIARKFRIPIVNHRWVEDCIKEGRRVPEDSYTMQSGHEVGPLLMEVPVTVQANSLSKKKVVSGSLCDIRSEGQNSDLSSWLCGISVLEDSSLLRKHEESSSYSSRRSKKGKRNSENEVSTEARHSRKGRKVVKNAGSVALDPIILDLSTDDQLIEMDRLHTEAAATSTISSRVNIGNIQENSEGLDIGLSRQSRTIDGSSNGIEQSRDSYNLSTPTNSTSFVEDPLPLTQTSVDLCSSAAEKSTGGDMVDNFDDLPTTKDLSCVICFTDFSSTRGILACGHRFCFPCIQGWVDHRIAMGKISTCPLCKASITGIMKVEHAATTDQKVYSQTIPCDYPGSDIFIPMDHEFRNNSIESSRAGACVICSGREPEDLLHNCDVCGSRRIHSYCMDPPLLPWTCSPCKELRMIYRNRSY 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05384 483 ProSiteProfiles Zinc finger RING-type profile. 332 377 IPR001841 -
Vifa1g05384 483 Gene3D BRCT domain 15 107 IPR036420 -
Vifa1g05384 483 MobiDBLite consensus disorder prediction 261 292 - -
Vifa1g05384 483 ProSitePatterns Zinc finger RING-type signature. 348 357 IPR017907 -
Vifa1g05384 483 ProSiteProfiles BRCT domain profile. 19 102 IPR001357 -
Vifa1g05384 483 SUPERFAMILY BRCT domain 18 102 IPR036420 -
Vifa1g05384 483 SUPERFAMILY FYVE/PHD zinc finger 423 474 IPR011011 -
Vifa1g05384 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 402 IPR013083 -
Vifa1g05384 483 SUPERFAMILY RING/U-box 323 383 - -
Vifa1g05384 483 SMART ring_2 332 376 IPR001841 -
Vifa1g05384 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 482 IPR013083 -
Vifa1g05384 483 SMART BRCT_7 16 92 IPR001357 -
Vifa1g05384 483 MobiDBLite consensus disorder prediction 166 199 - -
Vifa1g05384 483 MobiDBLite consensus disorder prediction 166 194 - -
Vifa1g05384 483 Pfam Zinc finger, C3HC4 type (RING finger) 332 376 IPR018957 GO:0046872
Vifa1g05384 483 Pfam twin BRCT domain 22 84 IPR001357 -
Vifa1g05384 483 PANTHER F5A8.9 PROTEIN 155 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05384 Vifa-Chr1 834952530 834956570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05384 51 108 Core DNA Replication Machinery Family AT4G02110 47.458 3.38e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05384 - - cam:101495587 627.476