Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05380 ATGGATAGCAGAACATGCTCTGAACTTCCACCTGGCTTCAGGTTTCATCCAACTGATGAGGAGTTAATTGTGTACTATCTTTGTAATCAAGCAACTTCACAACCATGTCCTGCATCTATCATCCCAGAAGTTGATATCTATAAATTTGATCCATGGCAATTACCAGATAAATCAGATTTTGGAGAAAATGAATGGTATTTTTTTAGTCCAAGGGAGAGAAAATATCCAAATGGGGTGAGGCCTAATAGAGCAACAGTTTCAGGTTATTGGAAAGCTACAGGGACAGACAAATCAATCTTTAGTGGATCTAAGCATATTGGGGTTAAGAAAGCTTTGGTTTTTTACAAGGGTAGGCCACCAAAAGGAATTAAAACAGATTGGATTATGCATGAGTATAGATTAATTGGATCAAGAAGACAAACCAATAGACAAATTGGCTCCATGAAGCTAGATGATTGGGTGTTATGTAGAATCTACAAAAAGAAGAACAGCACAAAATCATTGGACACAAACCATGATTACTCATCAAACCAAATCAATATGACACAAAGAAAAGATGCTAATGAACAAGAATCGGTGAAATTTCCAAGGACATGTTCCCTTACTAATCTTCTAAATATGGATTACTTGGGACCAATATCACAAATATTATCAGATGGATCATATAATTCAACTTTCGAATATCAAATTAATACTGCAAATGATGGAATAATTGACCCCTTTGTAAAGCCACAAATGGTTGAAATGGCTACTACTAACAACAACTCTTTTGGAGGTGATTCAGGGAAGTACCGTGGGAACCAAGTATGTGATTAA 816 0.3591 MDSRTCSELPPGFRFHPTDEELIVYYLCNQATSQPCPASIIPEVDIYKFDPWQLPDKSDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKSIFSGSKHIGVKKALVFYKGRPPKGIKTDWIMHEYRLIGSRRQTNRQIGSMKLDDWVLCRIYKKKNSTKSLDTNHDYSSNQINMTQRKDANEQESVKFPRTCSLTNLLNMDYLGPISQILSDGSYNSTFEYQINTANDGIIDPFVKPQMVEMATTNNNSFGGDSGKYRGNQVCD 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05380 271 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Vifa1g05380 271 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Vifa1g05380 271 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Vifa1g05380 271 FunFam NAC transcription factor 18 165 - -
Vifa1g05380 271 SUPERFAMILY NAC domain 6 161 IPR036093 GO:0003677|GO:0006355
Vifa1g05380 271 PANTHER NAC TRANSCRIPTION FACTOR 56 9 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05380 Vifa-Chr1 833996943 833998339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05380 1 216 NAC Transcription Factor Family AT1G69490 67.105 6.31e-114 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g05380 NAM 4.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05380 - - gmx:732552 439.884