Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05347 ATGTCAGGCAAGATGTCTAAACATTATGTTACTGATGTAGATCACGGCGGACTTGGGAGCTTAAGTTTGATTATGTCATTGGGAACTCATGCATTTTGTCTCTCCTTTCATCAACCCTACAAAATCAAAGAAAACATGGTACCAATTAATTTGCTCTTGCTTGGATTTCTTACTATATTTTCATCTGCTTATGGCTATGGAGGAGGATGGACTAATGCCCATGCAACCTTCTATGGAGGAAGTGATGCATCTGGAACAATGGGTGGTGCATGTGGGTATGGTAACCTATACAGTCAAGGTTATGGAACAAACACTGCTGCTTTAAGCACAGCTTTGTTCAACAGTGGTTTGAGCTGTGGCTCTTGTTTTGAGATAAGATGTGCTGGTGACCATAAATGGTGTCTTCCTGCTTCCATTTTGGTTACTGCCACTAATTTCTGTCCTCCAAACAATGCCTTACCTAATAATAATGGAGGATGGTGTAACCCTCCTTTGCATCACTTTGATCTTGCTCAACCTGTTTTTCTTAGAATTGCACAATATAAAGCTGGAATTGTTCCTGTTTCTTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGAATTAGGTTTACAATAAATGGACATTCCTACTTCAATTTAGTCCTAGTAACAAATGTGGGTGGTGCTGGAGATGTACATTCAGTTGCTATTAAAGGTTCAAGAACAGGGTGGATGCCAATGTCAAGAAACTGGGGACAAAATTGGCAAAGCAACAATTATCTCAATGGACAACCTTTGTCTTTTAAGGTTACAACAAGTGATGGAAAAACCATTGTTTCAAACAATGTTGCCCCTTTTGGTTGGTCCTTTGGTCAAACCTACACTGGTGCCCAATTCCACTAG 882 0.407 MSGKMSKHYVTDVDHGGLGSLSLIMSLGTHAFCLSFHQPYKIKENMVPINLLLLGFLTIFSSAYGYGGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCFEIRCAGDHKWCLPASILVTATNFCPPNNALPNNNGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQPLSFKVTTSDGKTIVSNNVAPFGWSFGQTYTGAQFH 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05347 293 CDD DPBB_EXPA_N 69 195 - -
Vifa1g05347 293 PANTHER EXPANSIN-A15 55 292 IPR002963 GO:0009664
Vifa1g05347 293 Gene3D - 200 293 IPR036749 -
Vifa1g05347 293 FunFam Expansin 60 196 - -
Vifa1g05347 293 SUPERFAMILY PHL pollen allergen 197 289 IPR036749 -
Vifa1g05347 293 Pfam Lytic transglycolase 105 190 IPR009009 -
Vifa1g05347 293 SUPERFAMILY Barwin-like endoglucanases 55 218 IPR036908 -
Vifa1g05347 293 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Vifa1g05347 293 PRINTS Expansin/Lol pI family signature 69 84 IPR007118 GO:0005576
Vifa1g05347 293 PRINTS Expansin/Lol pI family signature 109 127 IPR007118 GO:0005576
Vifa1g05347 293 PRINTS Expansin/Lol pI family signature 275 289 IPR007118 GO:0005576
Vifa1g05347 293 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Vifa1g05347 293 PRINTS Expansin/Lol pI family signature 183 199 IPR007118 GO:0005576
Vifa1g05347 293 Pfam Expansin C-terminal domain 201 278 IPR007117 -
Vifa1g05347 293 Gene3D - 58 196 IPR036908 -
Vifa1g05347 293 PRINTS Expansin signature 139 149 IPR002963 GO:0009664
Vifa1g05347 293 PRINTS Expansin signature 246 267 IPR002963 GO:0009664
Vifa1g05347 293 PRINTS Expansin signature 199 211 IPR002963 GO:0009664
Vifa1g05347 293 PRINTS Expansin signature 158 175 IPR002963 GO:0009664
Vifa1g05347 293 PRINTS Expansin signature 175 188 IPR002963 GO:0009664
Vifa1g05347 293 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Vifa1g05347 293 PRINTS Expansin signature 275 291 IPR002963 GO:0009664
Vifa1g05347 293 PRINTS Expansin signature 100 114 IPR002963 GO:0009664
Vifa1g05347 293 PRINTS Expansin signature 127 138 IPR002963 GO:0009664
Vifa1g05347 293 SMART dpbb_1 105 190 IPR007112 -
Vifa1g05347 293 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 210 289 IPR007117 -
Vifa1g05347 293 FunFam Expansin 200 292 - -
Vifa1g05347 293 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 88 200 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05347 Vifa-Chr1 831276676 831281804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05347 49 293 Expansin Gene Family AT2G03090 81.224 5.63e-151 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05347 - - gmx:100527059 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05347 1 831276676 831281804 Vifa1g05347 1 831276676 831281804 ECH