Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05342 ATGGGGAGGGTGAAACTAAAGATAAAGAGGTTGGAGAACACAAATGGTCGACAATCAACCTATGCAAAAAGGAAAAATGGAATAATGAAGAAAGCTAGTGAATTATCTATATTATGCGATATAGATATTATACTTCTCATGTTTTCTCCAGGTGGAAAACCTTCATTATGCACCGGGAGACGCAGCAACTTTGAGGACGTAATGACAAAGTTTTCTCAACTAACCTCACAAGAAAGGGCAAAGAGGAAATTGGAGAGTCTTGAAGCACTAAAGAAAACATTTAAGAAGTTAGATCATGATGTGGTTATTCAAGACTTTTATGGTACAAGTAGTCAAACTGTTGAGGATTTGAGCGATCAAGCTAAGGTATTACATAACCGTATCTCCCAAATACACGAGCGACTAAGACATTGGAGTGACATTGAGAAAATTAGTGGTGTGGATGAATTGGGACAGATGGAAAATTCACTCAAAGAGTCTCTTAATCAAATTCAAACTCACAAGGAAAATGTACAAAAACAACAACTAGCATCACTTCAATGCAATAACCAGTTCAATGAATTGCATGTTCCCTATAAAATGAGTGCTCAACAGCAATTTCAATCTCTACCATGGATGGTTAATGGTGACAATCAGAATATAGTACTTCCTGAAGAACCAAACTTGCTTCTCCACAAAGATGTAGAGGGCTCAACAAGCTCATCATTTGGAAGCTATGCAAGCTATCTTGGCTCAAGCACCAAACCAAACATATCCAATTCCAGTCAAGAAAATTGTGTTCTTAGTGACATGAGCAACAATCCTACAGCACCTCCTGTGAGATTACCATTTAATGGACAGTTTTCATACCTTCCAAACAATTTCAACATAATGAATGATATGAAGCTTCAACCAGCTACAACAGGGATGAATAATAATAATCCACATGAAAACCAAGTAGATAATTATCATGTCAATGGAAACTTTGAAGCACCTAAACAAGGGTTTGATCAATCTAACCACCATGGTTGGACTTCAAATTCTGGTCCTTGTGCTGTTAATATCTTTGATGAAAATTTGTATCCACAGCCAAATTTTCCACAAGTGCATTTTGGCTTCACATAA 1104 0.3687 MGRVKLKIKRLENTNGRQSTYAKRKNGIMKKASELSILCDIDIILLMFSPGGKPSLCTGRRSNFEDVMTKFSQLTSQERAKRKLESLEALKKTFKKLDHDVVIQDFYGTSSQTVEDLSDQAKVLHNRISQIHERLRHWSDIEKISGVDELGQMENSLKESLNQIQTHKENVQKQQLASLQCNNQFNELHVPYKMSAQQQFQSLPWMVNGDNQNIVLPEEPNLLLHKDVEGSTSSSFGSYASYLGSSTKPNISNSSQENCVLSDMSNNPTAPPVRLPFNGQFSYLPNNFNIMNDMKLQPATTGMNNNNPHENQVDNYHVNGNFEAPKQGFDQSNHHGWTSNSGPCAVNIFDENLYPQPNFPQVHFGFT 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05342 367 Coils Coil 77 97 - -
Vifa1g05342 367 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vifa1g05342 367 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Vifa1g05342 367 CDD MADS 2 54 - -
Vifa1g05342 367 Coils Coil 150 177 - -
Vifa1g05342 367 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Vifa1g05342 367 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g05342 367 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa1g05342 367 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g05342 367 Coils Coil 114 134 - -
Vifa1g05342 367 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 221 - -
Vifa1g05342 367 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa1g05342 367 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Vifa1g05342 367 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05342 Vifa-Chr1 831043818 831046509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05342 1 325 Type I MADS-box Gene Family AT2G03060 47.941 2.21e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa1g05342 SRF-TF 4.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05342 - - lang:109356063 508.064