Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05340 ATGGTGATAATTGAACTCTATCCCAAATTCTTCTTCTCTCGAAACCCAATTCCTAAACCCTTCAAAAACCCTAATTTCAATCCAAGAAACATCGTTCAATTTTCCCACCAACCAATAACCACTCATCCAAACCGTGGCATAATCTTCCGAGAAAAAGTTCTATACCTTGAAAAACTCAAAGTAAACCCAGAAAAAGCCTTCAGACAAAACCCCACCCTCCGAACCTGTCCTCTCCGAACGCTAAAATCCGTCGAACAATGCCTTTCATCAATCGGTATACACAGAACCGAAATGGGTCGAATCCTCGACATGTTTCCTGCACTTCTCACGTGCGAACCACACAACGACATTTACCCCCTTCTCGATTTCCTCCTCAACGAGGTTCGAATCCCTTACCATGATGTTCAAAAATCAATCTTGCGGTGTCCTAGGTTGTTGGTGAGTAGTGTTGAGAATCGATTGAGACCTGTGCTTTGGTTTTTGAGGGGATTAGGGTTTGTTGGACCGCATTCTCTCACGTGTCAAACGACATTGCTTTTGGTTTCGAGTGTTGAGGACACCCTTTTGCCTAAAGTTGAGTTTTTGATGGGGTTGGGGCTCACACGTGTGGAGGTTTCAAATATGGTTGTTAGATCTCCGGGGTTGTTGACTCTTAGTGTGGCGAATAATTTGGGACCGAAAGTGGAGTTTTTCTTGAATGAAATGAAGGGTGATGTTGCTGAGTTGAAGAGGTTTCCTCAGTATTTTTGTTTTAGTTTGGAGAAGAGGATTAAGCCGCGGTATGCTGAGTTAGTTCGGCTTGGATTGGAGATTCCTCTGCAAGAGATGTTGAGGGTTAGTGATTGTGAGTTTGATTCGAGGTTGTTTGAATTGCGGTTAAGGGAACTTGAGGGAAGATTAGAGTAA 906 0.4338 MVIIELYPKFFFSRNPIPKPFKNPNFNPRNIVQFSHQPITTHPNRGIIFREKVLYLEKLKVNPEKAFRQNPTLRTCPLRTLKSVEQCLSSIGIHRTEMGRILDMFPALLTCEPHNDIYPLLDFLLNEVRIPYHDVQKSILRCPRLLVSSVENRLRPVLWFLRGLGFVGPHSLTCQTTLLLVSSVEDTLLPKVEFLMGLGLTRVEVSNMVVRSPGLLTLSVANNLGPKVEFFLNEMKGDVAELKRFPQYFCFSLEKRIKPRYAELVRLGLEIPLQEMLRVSDCEFDSRLFELRLRELEGRLE 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05340 301 Gene3D Transcription termination factor 3, mitochondrial 79 297 IPR038538 -
Vifa1g05340 301 PANTHER CGI-12 PROTEIN-RELATED 64 290 IPR003690 GO:0003690|GO:0006355
Vifa1g05340 301 Pfam mTERF 134 284 IPR003690 GO:0003690|GO:0006355
Vifa1g05340 301 Pfam mTERF 64 166 IPR003690 GO:0003690|GO:0006355
Vifa1g05340 301 SMART mt_12 170 201 IPR003690 GO:0003690|GO:0006355
Vifa1g05340 301 SMART mt_12 239 270 IPR003690 GO:0003690|GO:0006355
Vifa1g05340 301 SMART mt_12 206 238 IPR003690 GO:0003690|GO:0006355
Vifa1g05340 301 SMART mt_12 136 167 IPR003690 GO:0003690|GO:0006355
Vifa1g05340 301 SMART mt_12 64 94 IPR003690 GO:0003690|GO:0006355
Vifa1g05340 301 SMART mt_12 99 131 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05340 Vifa-Chr1 830667398 830668303 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g05340 mTERF 3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05340 K15032 - gmx:100785219 363.229